PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0258.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 236aa    MW: 27441.6 Da    PI: 5.3837
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1324.1e-10721184188
                 FAR1  41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          ++++k++ ++  +++ etrtgCkak+++ ++ +++w+v+k+e eH H+
  Kalax.0009s0258.1.p  72 KSKDKRQISRDVKKQRETRTGCKAKIEIALR-NNEWVVDKFEDEHKHS 118
                          2222222456778999***************.9**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-770118IPR004330FAR1 DNA binding domain
PfamPF105514.5E-11190234IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVNETHLSDY NILDQEESGT NDGILMSSTQ GEDNLILGRV FSSKDEEYDF YNHYVLDLGF  60
GILVNGDAKK EKSKDKRQIS RDVKKQRETR TGCKAKIEIA LRNNEWVVDK FEDEHKHSRT  120
TPSKYLNMLR TEKKNHIDYE YYGIIEYFYE NIKLDGSHYF AMDLAPDGSL RSVFWVDGRS  180
RSAYTPFGDV LVFDVTYRTN HFKLPFAPFV SVNHHRQYIL FGAALLEDET EETFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2U1MT616e-45A0A2U1MT61_ARTAN; Protein FAR1-RELATED SEQUENCE 5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.46e-30FAR1-related sequence 2