PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0020.6.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 237aa    MW: 27313.3 Da    PI: 8.1161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0020.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.96.9e-145689135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0010s0020.6.p 56 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 89
                         ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011415.44650103IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-95099IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-1351100IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.18E-1152103No hitNo description
CDDcd002028.17E-105598No hitNo description
PfamPF003201.9E-105688IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379155236IPR027353NET domain
PfamPF170352.0E-15165226IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTRHHHLARI GGTNNKQDFI FLCKALLLMI LFQGYLERPR KFRSMIDILS QNGQSCAHCN  60
TTQAPMWRKT PSGARICDFC GLRLRKRGMQ LSPQKKYQTI TGSLQEADNK DEEVTDDLKF  120
LLGNDRLQVE QTMKKYADEI SASLGLLEQQ LEGFLDNVTS KCRSMTFFEK QSLWSLIKDL  180
PPENFDRVVE IIKRSRGLDQ RDENDILVDL EDTDNAVLWR LYYYAKAVEN ARNLVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660834.18e-49PREDICTED: GATA transcription factor 7
RefseqXP_010660835.18e-49PREDICTED: GATA transcription factor 7
TrEMBLD7TWF42e-47D7TWF4_VITVI; Uncharacterized protein
STRINGVIT_14s0066g00150.t013e-48(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-07GATA transcription factor 15