PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 226aa    MW: 26223.4 Da    PI: 8.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-182269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Kalax.0010s0038.1.p 22 KGPWTMEEDLILINYIANHGEGIWNSLAKSAGLKRTGKSCRLRWLNYL 69
                         79********************************************97 PP
2Myb_DNA-binding54.13.6e-1775118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE+ l++++++++G++ W++Ia++++ gRt++++k++w++
  Kalax.0010s0038.1.p  75 RGNITPEEQMLILQLHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 118
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-231672IPR009057Homeodomain-like
PROSITE profilePS5129417.0091769IPR017930Myb domain
SuperFamilySSF466893.63E-3019116IPR009057Homeodomain-like
SMARTSM007173.9E-132171IPR001005SANT/Myb domain
PfamPF002497.1E-162269IPR001005SANT/Myb domain
CDDcd001673.24E-102469No hitNo description
PROSITE profilePS5129424.29170124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2473123IPR009057Homeodomain-like
SMARTSM007173.6E-1674122IPR001005SANT/Myb domain
PfamPF002494.3E-1675118IPR001005SANT/Myb domain
CDDcd001675.97E-1379118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDGKRPYFLT SCSHSVDPEV RKGPWTMEED LILINYIANH GEGIWNSLAK SAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQMLILQLH AKWGNRWSKI AKHLPGRTDN EIKNFWRTRI  120
QKYINKQDEN HHHQQQDDTQ LMTTCKQVSQ ASSSQMSTTT TAASSYLNAF DNHHHHHQAH  180
SPQQLFPYPL EPYPNGGIIM PDDLNDSMWN NMEEFWSINA VSTHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271012411128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468270.14e-80PREDICTED: myb-related protein 305-like
RefseqXP_028772296.14e-80myb-related protein 305
SwissprotP813916e-78MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0K0MAN21e-78A0A0K0MAN2_FRAAN; Emission of benzenoids II protein
STRINGXP_006446527.13e-78(Citrus clementina)
STRINGXP_010108787.17e-78(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-74myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]