PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0264.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 636aa    MW: 71246.3 Da    PI: 6.7658
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.7e-094054421954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Kalax.0010s0264.1.p 405 FEHflHPYPTDVDKHILARQTGLSRSQVSNWFINARVR 442
                          554459******************************88 PP
2BELL1153.8e-37268336472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          elqk+ka+Lls+leeVd+rYk+y++q+++v+ssFea+ag g+a++Y +lA+ka+SrhFrcL+d i++qi
  Kalax.0010s0264.1.p 268 ELQKRKAQLLSMLEEVDRRYKHYCDQMKAVVSSFEAAAGNGAATVYSALASKAMSRHFRCLRDGIVDQI 336
                          89******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-50189334IPR006563POX domain
PfamPF075261.3E-46195332IPR006563POX domain
PROSITE profilePS5007111.774383446IPR001356Homeobox domain
SMARTSM003897.6E-9386450IPR001356Homeobox domain
CDDcd000869.30E-12386447No hitNo description
SuperFamilySSF466895.13E-17387453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-28389453IPR009057Homeodomain-like
PfamPF059201.0E-17403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MEAEAHRHED KLRTMNSSST GFCYSDISTS TLPTHLMNQI HTIESNPDQM FNLTTNMEMI  60
GYFPPANDDQ SSMVVAQDHS NSWQENHRLL VDDSSLRCVF SGEGNNQRTS QGLSLSLSSI  120
NPSAGFESFD LRHTSSTTPT TNHQMRYVSS TSREGYYGKP LHSIPPEQQM MPDGFLGKVS  180
NLHIHQHGLH QFHLIRHSKY LTPAQELLNE FCSLGSKQSE HHHYHQQKKS SKQKVNRVNQ  240
WDHNDHAGTC SNEDSSRSHN LNSLVLLELQ KRKAQLLSML EEVDRRYKHY CDQMKAVVSS  300
FEAAAGNGAA TVYSALASKA MSRHFRCLRD GIVDQIRATK KAMGEKDDQV ALGTTRGETP  360
RLRLLDQTLR QQKAFQQLNM MECHPWRPQR GLPERSVSVL RAWLFEHFLH PYPTDVDKHI  420
LARQTGLSRS QVSNWFINAR VRLWKPMVEE MYMEEAKEEL ENPNTSHNLA SNSDDNSMPA  480
AGNTHFEDEK PTPDQLIRID SDCLSSIINH KTEPPPHHTG PTMHHGGSAS LQLQHPFYSG  540
AIELDFSSYS HGQNLSHAGG VSLTLGLQQH GEAGGVSLAF PSSAAGGSSM FYGGGRESID  600
DCQTMQYASM MDGDQGQNLP YRNLMGAQLL HDMAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-15392449158Homeobox protein Meis1
4xrs_B4e-15392449158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040323.20.0PREDICTED: homeobox protein BEL1 homolog
RefseqXP_007040324.20.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-139BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A061G6K40.0A0A061G6K4_THECC; POX family protein isoform 1
STRINGEOY248260.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-119TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]