PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0282.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 266aa    MW: 30050.7 Da    PI: 7.4201
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0282.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.1e-36221132102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y+++ed+++++liswse+g+sf+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g++
  Kalax.0010s0282.1.p  22 FLVKTYQLVEDPSVDDLISWSEDGSSFIVWRPAEFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVGDR---------WEFTNEFFKRGER 102
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll+ i r+k 
  Kalax.0010s0282.1.p 103 KLLKGITRRKG 113
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3619111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-3919111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-212245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-216072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-217385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MARPAAATSA EDELHRSVPP PFLVKTYQLV EDPSVDDLIS WSEDGSSFIV WRPAEFARDL  60
LPRYFKHNNF SSFVRQLNTY GFRKVVGDRW EFTNEFFKRG ERKLLKGITR RKGSTAAAVA  120
VTPLNQIRPS LTEAAATSRL EQVVSSTSSP ACTTTTTVNT GSTGNCTQGS PDSELAEENA  180
RLRMENERLA RELSRLRAMW DSVYSLVSNY GRIVNDSDER EESPARGSPR LFGVSIGEKK  240
RVWEEEEEER TRKMKMMKFE PLVLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-262011618125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110740.11e-78heat stress transcription factor B-2b
RefseqXP_028110741.11e-78heat stress transcription factor B-2b
SwissprotQ9SCW45e-71HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A3P6ATF91e-73A0A3P6ATF9_BRACM; Uncharacterized protein
STRINGXP_008369462.17e-74(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-63heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]