PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0011s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 525aa MW: 57306.6 Da PI: 6.3386

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0011s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	363	409	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RR +iN+++ L++l+P + K++Ka++L +A+eY++ Lq Kalax.0011s0013.1.p 363 VHNLTERKRRGKINEKMRALQDLIPYC-----NKVDKAAMLDEAIEYLRVLQ 409 5***********************8.....6**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-20	356	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-20	356	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.774	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.79E-15	362	413	No hit	No description
Pfam	PF00010	1.2E-11	363	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-16	365	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MSFPEFYCEK MRPNQLKIPR SADKQQTSMP PANSDYGELV WENGQIVVKG GQSREVSRFP 60 NKGSFINSKT GKSWSRLGFD EVAAGGEADS DMLSWFYHLD DTLPHESTSG FSAEIFGVTS 120 DVLPVSYTVN KLSNPVKGSA SFALDSKTEV SDSLSLTYSE SEVSSVVGKG VAKYALQSDS 180 LEDQLSELRF YKKQDKAAAG CPLGGRSYSH AKNFPHFSWS AARSKNNLIS DGARASRRFV 240 TRETAAATEE MLVDTNDQTV DVMMKDLPGR PVERPANAFR AEGGLKANQG SRNAQMERMD 300 ADMNKKPAAA AALPSLCSDN GGVNRLKRKH RDEEDWEDSS EDAEEESAII KKVGSKRSRP 360 AEVHNLTERK RRGKINEKMR ALQDLIPYCN KVDKAAMLDE AIEYLRVLQL QVQMMSMRAQ 420 MCALPMMAQP GLQHPYTTAP SSQFLPLGMG YQAGALDMTT GFPAQAACFP GQFKPPPIFW 480 NAAQGLPTSM PGLLVPMPGA PPTPAPGSAD ETPNSKDPLH EEAV*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MSFPEFYCEK MRPNQLKIPR SADKQQTSMP PANSDYGELV WENGQIVVKG GQSREVSRFP  60
NKGSFINSKT GKSWSRLGFD EVAAGGEADS DMLSWFYHLD DTLPHESTSG FSAEIFGVTS  120
DVLPVSYTVN KLSNPVKGSA SFALDSKTEV SDSLSLTYSE SEVSSVVGKG VAKYALQSDS  180
LEDQLSELRF YKKQDKAAAG CPLGGRSYSH AKNFPHFSWS AARSKNNLIS DGARASRRFV  240
TRETAAATEE MLVDTNDQTV DVMMKDLPGR PVERPANAFR AEGGLKANQG SRNAQMERMD  300
ADMNKKPAAA AALPSLCSDN GGVNRLKRKH RDEEDWEDSS EDAEEESAII KKVGSKRSRP  360
AEVHNLTERK RRGKINEKMR ALQDLIPYCN KVDKAAMLDE AIEYLRVLQL QVQMMSMRAQ  420
MCALPMMAQP GLQHPYTTAP SSQFLPLGMG YQAGALDMTT GFPAQAACFP GQFKPPPIFW  480
NAAQGLPTSM PGLLVPMPGA PPTPAPGSAD ETPNSKDPLH EEAV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-29	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0011s0013.1.p