PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 336aa    MW: 37580.9 Da    PI: 4.9346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-14128179155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++++k+L+
  Kalax.0011s0029.1.p 128 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGDQASIIGGAINFVKELE 179
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.16E-14126183No hitNo description
SuperFamilySSF474592.36E-17127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14128196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALDAVVFPQ DPFGYNCSFK DYFQGMEDEI SGGAIDIDTN SWNYDQLGFH EDHDQDKSLL  60
SILDNKNATH SVNWHEPSPV NSSPEEFHGG GVYEMPVEEV QQKDQPVPTR RKRRRTKACK  120
NKEEVENQRM THIAVERNRR KQMNEYLAVL RTLMPSSYAQ RGDQASIIGG AINFVKELEQ  180
LLQALEAQKS TKNNHQQQDD QPQEDPNNNL VSPFANFFTF PQYSTGATSP TDDAKVAEGR  240
FGAVAAAADI EVTMVESHAN VKILAKRCSR QLVKLMGAFQ SLSLTVQHLN VSSLDHMVLY  300
SVSVKVEEGC KLNSVDEIAA AVNQMLRNIE EESLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285733.21e-110PREDICTED: transcription factor bHLH96
TrEMBLA0A438FZU41e-109A0A438FZU4_VITVI; Transcription factor bHLH96
TrEMBLE0CRQ81e-109E0CRQ8_VITVI; Uncharacterized protein
STRINGVIT_18s0001g06650.t011e-109(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-81bHLH family protein