PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0164.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 617aa    MW: 67346.7 Da    PI: 4.6774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.6e-5391411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Kalax.0011s0164.1.p   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPdlSVIKTGDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGK 97 
                          699************************999.99**************96448888999******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++sk     ++l+g+kktLvfy+grapkge+t+W+mheyr+
  Kalax.0011s0164.1.p  98 DRTIKSKktaaPSNLIGMKKTLVFYRGRAPKGERTHWIMHEYRA 141
                          ******855555555***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-606164IPR003441NAC domain
PROSITE profilePS5100558.1089164IPR003441NAC domain
PfamPF023657.9E-2810140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAVLSTDALP LGFRFRPTDE ELINHYLRLK INGRDSEVRV IPEIDVCKWE PWDLPDLSVI  60
KTGDPEWFFF CPRDRKYPNG HRSNRATEAG YWKATGKDRT IKSKKTAAPS NLIGMKKTLV  120
FYRGRAPKGE RTHWIMHEYR ATDKDLDVTG PGQGAFVLCR LFRKSDERID VPKYDEVDHT  180
GSSPATTRSS PDDTSSDIVQ EAGAPETKQP EGIRRWLTDK ADKMTDSFAG PVDSCCSNLA  240
SDSEDHAVEI KTSEDYPVVG TSPEVYESNH NLLDNNEFDS TLIPEDLPYV GSPFASDFGY  300
RYNGFQDGTG EQDIVLTELL DEVLNDLPCE ESASHKNSAI GSGSYLSDQL CVSSYRQSDT  360
CGIGNGIYGN KDVEMSQLQY DLGIGGPLWS NEPADSESNI QILAYPGHFP ADGSFGDGVL  420
GSSIVELPES ATGVHGRSLK SEESADPKAC ANGGAKTGIK IRTRQPQRQL NSDASLQQGI  480
APRRIRLQIP STVDVLGETM KSEDQAEVVS SVSSVALATE ERASTTESEA DSDLTASEKK  540
SEGCDISREQ NSCSLRQRVK QSGQVNTPPI TWKSRRGAIA AWNGPVSLEA VIASVILLAV  600
ISLAVILGAG RWYSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-45416412165NO APICAL MERISTEM PROTEIN
1ut4_B6e-45416412165NO APICAL MERISTEM PROTEIN
1ut7_A6e-45416412165NO APICAL MERISTEM PROTEIN
1ut7_B6e-45416412165NO APICAL MERISTEM PROTEIN
4dul_A6e-45416412165NAC domain-containing protein 19
4dul_B6e-45416412165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927949.11e-176protein NTM1-like 9
TrEMBLA0A2N9IEK61e-167A0A2N9IEK6_FAGSY; Uncharacterized protein
STRINGPOPTR_0011s15230.11e-162(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-124NAC transcription factor-like 9