PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0168.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 698aa    MW: 75381.2 Da    PI: 9.539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.58.7e-2970154187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+ aL+++r+em+ ++r++ lk+plWeevs+k+ e g+ rs k+Ckek+en++k+yk++keg+ +r  ++ +t+++f++lea
  Kalax.0011s0168.1.p  70 RWPRQETVALLKIRSEMDLAFRDATLKGPLWEEVSRKLGELGYVRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYRFFTHLEA 154
                          8********************************************************************98..56667******985 PP
2trihelix107.11.2e-33513598187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k evlaLi++r+++e+r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Kalax.0011s0168.1.p 513 RWPKVEVLALIKLRSNLENRYQEAGPKGPLWEEISAGMRQMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFNELDA 598
                          8*********************************************************************8.99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7663127IPR017877Myb-like domain
SMARTSM007170.004967129IPR001005SANT/Myb domain
CDDcd122032.49E-2769134No hitNo description
PfamPF138372.9E-1969155No hitNo description
PROSITE profilePS500907.166506570IPR017877Myb-like domain
SMARTSM007170.0026510572IPR001005SANT/Myb domain
CDDcd122033.51E-30512577No hitNo description
PfamPF138371.7E-23512599No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MQQQQGSQYG GVSPDLGSAP RTQMLAAGGG GSEQAEAASP ISSRPPASIM NFDDLVDDTD  60
RAGSTSSGNR WPRQETVALL KIRSEMDLAF RDATLKGPLW EEVSRKLGEL GYVRSGKKCK  120
EKFENVHKYY KRTKEGRAGR QDGKTYRFFT HLEALQALTA SGSGSGSTNL IPSAATPPPP  180
PLLMTSSGPL AAAASPLRNM QFATPVSVGI GGNIVMQMAG VAPPSQPFTM YSRDLSMGAG  240
VSVPGSVSAA APAPSVAPVG ISFSSGSSSS GSYDSDEDEE EVDDVSEEER PSSTPVGSGQ  300
KRKRGYSFSS RGGGGTKRRM MDFFEGLMKQ VMQKQEAMQQ RFLEAIEKRE QDRMMREEAW  360
KRQEAARLSR EQELMVQERA TAASRDAAIV SFLQKITGQT IQLPQPVSHQ NVAVTPAAPP  420
PSVPTMPPAA PAAIPSSTSP PSRQQFQQKQ HKSQQQKQQQ QHQPQNTDLV RQHQMPPPPS  480
TEAIMAVPER QIPPQDPPSG GGGGSYSEAA SSRWPKVEVL ALIKLRSNLE NRYQEAGPKG  540
PLWEEISAGM RQMGYSRSSK RCKEKWENIN KYFKKVKESN KKRPEDAKTC PYFNELDALY  600
QKKILGGAYS GSSSIIVPFQ QQQQPQQGLS VDQSKNQETS ISNVGVVQTS AAAQVESADK  660
RDGTDLEQPN NGGLPDSIFE DQGGNAGATG GSRKRTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039269.20.0PREDICTED: trihelix transcription factor GTL1 isoform X2
TrEMBLA0A061G1Q90.0A0A061G1Q9_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 2
STRINGEOY237690.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-46Trihelix family protein