PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0200.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 323aa    MW: 35255.4 Da    PI: 7.132
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.8e-15146184341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          + +C+Ckks+Clk+YC+Cfa g +C+ +C C +C Nk++
  Kalax.0011s0200.1.p 146 ETRCKCKKSECLKLYCDCFALGMFCGTSCACINCWNKSD 184
                          679*********************************986 PP
2TCR39.41.2e-12210247239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +++gCnCk+skC+k+YCeC++a++ C + C+C++C N 
  Kalax.0011s0200.1.p 210 KTRGCNCKRSKCVKNYCECYQANAGCCQGCHCHGCANP 247
                          689*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-13144185IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.387145249IPR005172CRC domain
PfamPF036381.2E-11147182IPR005172CRC domain
SMARTSM011141.2E-10209250IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-9212246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSDNLYAQGM MSQQYEMEDS GSGYQQQALN ISLCEPRHFD SDLPRSGNFS RNLHFLLPST  60
SHYGVQLPNT NFLNNINSAA LETITPNRDP PGRLSVQLPN IYVDVVVGQT SALATNITPA  120
ELLLSPSSAY NNHRRSFSSS NINVEETRCK CKKSECLKLY CDCFALGMFC GTSCACINCW  180
NKSDYEDSIQ TARDQIQVRN PHAFDSRVNK TRGCNCKRSK CVKNYCECYQ ANAGCCQGCH  240
CHGCANPYGS MPASIYRIPE GLNAANLNTA LTGLPGDIDH IFNNSSEVGT FNSSSGMVAN  300
GQAHVSRFLA SSPHGSDFPK TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1614924614120Protein lin-54 homolog
5fd3_B7e-1614924614120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-28Tesmin/TSO1-like CXC domain-containing protein