PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0012s0061.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 186aa MW: 21475.4 Da PI: 8.933

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0012s0061.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.2	9.9e-15	62	120	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL + v + +eN+ L+++l+++ + ++k+ +e+ Kalax.0012s0061.1.p 62 RKQRRMISNRESARRSRMRKQRHLDELWRHVMRFRNENRNLIEKLNSMYESIDKMVQEN 120 79************************************************999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-14	58	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-9	60	116	No hit	No description
PROSITE profile	PS50217	10.955	60	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.4E-13	62	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-11	62	112	No hit	No description
CDD	cd14702	1.25E-17	63	111	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSGANYVVPD SATMFLGSSS VTHCSAPFHH CNGFLGPPLK DLALQPQYSL SSKNSTFVID 60 ERKQRRMISN RESARRSRMR KQRHLDELWR HVMRFRNENR NLIEKLNSMY ESIDKMVQEN 120 AKLIEETSDL RLMLRTLQIG SPYNGLQDSD EVPCNRNTPV SEPHLLCYPW QGRVLFGENR 180 FTESI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	81	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095835.1	4e-48	basic leucine zipper 43-like
Swissprot	Q9FMC2	1e-28	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A068TW22	9e-47	A0A068TW22_COFCA; Uncharacterized protein
STRING	VIT_01s0010g00930.t01	2e-41	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	4e-35	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Kalax.0012s0061.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]