PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0062.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 524aa    MW: 55998.9 Da    PI: 5.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0062.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09330378355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kalax.0012s0062.2.p 330 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 378
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.89E-11325382No hitNo description
SuperFamilySSF474599.95E-17325395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16328392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6330378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSNETEFQPE KRAEDSVNYH SSHMQSDWPY NCGTIPGSST GFNSSARNVI GSSSCASDPM  60
MTSGPDSWDR SAVGPNVGFG IDVGNSSDLM RPVFDGGWNP LSKGGLFLPN ANGPGVLPGS  120
LTQFPSDSGF IQRAARLSCF GSGNFGGMVN PFARPESASP LAKRGPVARG PNIVNGSTPL  180
AFESDAHMAR AAECGGQNGS LPRNESLTRS LDESRPVRGA SSNEPDEADF RGSDGIEEPS  240
GAGGETCTVR GKAANKRKSD GQSASAEKII GDSSNSKSGE GAKLDGEPQL KPSPGTKNKG  300
SEKPEQKSQG TDPPKEEYIH VRARRGQATN SHSLAERVRR EKISERMKFL QDLVPGCSKV  360
TGKAVMLDEI INYVQSLQRQ VEFLSMKLST VSPQLDFDIE NLLAKDMFQP RAGPSGFPSE  420
VFMVYQHLIP SQTAQFQASL TISGSSPDLR RTTGSHPAAM GYKEPNSQLA NMWDEELHNV  480
IHMGFGDSGE PSKSQELNDA HHLTVPLATI QKLDSSMNDQ DCE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654187.11e-133PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654195.11e-133PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654202.11e-133PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654208.11e-133PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_019076890.11e-133PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A438JBG61e-132A0A438JBG6_VITVI; Transcription factor bHLH49
STRINGPOPTR_0010s14600.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.36e-88bHLH family protein