PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0082.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 237aa    MW: 26293 Da    PI: 4.1084
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.37.7e-137100795
                NF-YB   7 flPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +lP + v r++k+ l +    + is  kda     e +  fi ++++ a++ c++ kr+t+n+dd+l a+ ++ f +++ pl++ l+ +r
  Kalax.0012s0082.1.p   7 ELPKSIVRRVVKEKLSQfsdAGDISlhKDALLAFSESARVFIHYLSATANELCKESKRQTMNADDVLKAVEEIDFPEFLGPLRASLEDFR 96 
                          6888889999999887522244554438999999******************************************************** PP

                NF-YB  92 eleg 95 
                          + ++
  Kalax.0012s0082.1.p  97 QKNA 100
                          9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-237141IPR009072Histone-fold
PfamPF008083.5E-9776IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.34E-228126IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGEVVEELPK SIVRRVVKEK LSQFSDAGDI SLHKDALLAF SESARVFIHY LSATANELCK  60
ESKRQTMNAD DVLKAVEEID FPEFLGPLRA SLEDFRQKNA KKRAGAAKSK EVKKKRKEDV  120
PHEDERSIAE VEVNNDDNAN DQEHQNGLDE EGNKEADNEL QDDADKGGVE AADNVDEHDQ  180
HDASDNEEKD SEEAIAVEDR EEEDNDSIRS NEQRNDAGEE GNSINDDNGE DGAIEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A9e-11812018125DNA polymerase epsilon subunit D
5y27_A9e-11812018125DNA polymerase epsilon subunit D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100116KKRAGAAKSKEVKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-43nuclear factor Y, subunit B11