PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0173.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 313aa    MW: 34974.8 Da    PI: 8.8542
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.1e-26953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         k+ien++nrqvtfskRrng+ KKA+ELSvLCd+++a+i+fs++g+
  Kalax.0012s0173.1.p  9 KKIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDIALIMFSPSGR 53
                         68****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.791161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-36160IPR002100Transcription factor, MADS-box
CDDcd002655.48E-37276No hitNo description
SuperFamilySSF554551.44E-29284IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRVKLEIKK IENTTNRQVT FSKRRNGLVK KAYELSVLCD VDIALIMFSP SGRPSLFSGK  60
KSSFEQILNR YTSLPEHEQG SISSKPLELQ RHMTICKSQL EETHRKLKIF EGNPSDITTL  120
AEVNYNEKIL EDTLKRVRMR KVQVAQDFML VNDGHGVSWT PNMYSLDSLG MQVQRRTPQL  180
QILNFIGSGC LPPASRSELR RSIEMSPQHQ TSNLISLHNL QGSHEHSLSP SSGTEIENNI  240
NQAASHYNGY GAQPFDVNIS PWTQFYTPAT GAEQPGTETL FVGEKLPPIV GFSDGPVTGL  300
RLTQQICVAK LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-18188186MEF2 CHIMERA
6bz1_B4e-18188186MEF2 CHIMERA
6bz1_C4e-18188186MEF2 CHIMERA
6bz1_D4e-18188186MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922933.13e-70agamous-like MADS-box protein AGL104 isoform X2
RefseqXP_024930990.13e-70agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA5BY199e-75A5BY19_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09540.t011e-68(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-38AGAMOUS-like 104