PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0188.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 250aa    MW: 28413.2 Da    PI: 9.8122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0188.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-1661106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++  E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Kalax.0012s0188.1.p  61 RGKMSSTEERLVIELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 106
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4843855IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.1E-94168IPR009057Homeodomain-like
SuperFamilySSF466894.18E-2041111IPR009057Homeodomain-like
PROSITE profilePS5129425.89356110IPR017930Myb domain
SMARTSM007173.3E-1560108IPR001005SANT/Myb domain
PfamPF002491.9E-1461105IPR001005SANT/Myb domain
CDDcd001671.64E-1063106No hitNo description
Gene3DG3DSA:1.10.10.604.3E-1969107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDRTGRLSAG KCCRLIWRPP MGFCSKSFRF EGGGRQVLGL NRTGKSCRLR WVNYLHPGLK  60
RGKMSSTEER LVIELHAKWG NRWSRIARRL PGRTDNEIKN FWRTHMRKKA QERKRVNYLS  120
TTSSESSPSS SNHTQGSRCD SGKESFSDTG GNATVKEMGK KQTDEEGERI KVDDIWKDID  180
ISKDTITPLN DGYNQGLCNY SCTPLVSPLW EFCPDSLWRM DEEDSKMLTP SNNYLLACCE  240
AGKSRLRGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-174211037105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-164211091159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-164211091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-164211060128MYB TRANSFORMING PROTEIN
1mse_C6e-174211037105C-Myb DNA-Binding Domain
1msf_C6e-174211037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860260.19e-93PREDICTED: transcription factor MYB48-like isoform X1
SwissprotQ9LX823e-62MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2I4HVR82e-91A0A2I4HVR8_JUGRE; transcription factor MYB48-like isoform X1
STRINGXP_010426042.14e-79(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.44e-65myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]