PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0241.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 684aa    MW: 75925.2 Da    PI: 7.0681
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22111212199
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g  W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   
  Kalax.0012s0241.1.p 111 FCKILTASDTSTHGGFSVRRKHANEClpqldMSEATPTQELAAKDLHGYDWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL-- 198
                          99****************************9444445569************************************************.. PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                          +  ++ l+v+v+r+
  Kalax.0012s0241.1.p 199 RGVDGDLRVGVRRH 212
                          3488889****997 PP
2Auxin_resp86.93.9e-29237315183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++ +s F vvY+Pr+  s+F+++ +k+++++k+ +svG Rf m+fe+eds err++Gtv+g  d+++ +W+nSkWrsLk
  Kalax.0012s0241.1.p 237 ASHAVTAHSLFIVVYKPRT--SQFIISKNKYVESVKNGFSVGKRFTMRFEGEDS-ERRFTGTVIGAGDISS-EWSNSKWRSLK 315
                          689***************6..9*******************************7.6778*********777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-40101240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-39103226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-17109211No hitNo description
PfamPF023622.4E-20111212IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688111213IPR003340B3 DNA binding domain
SMARTSM010191.1E-18111213IPR003340B3 DNA binding domain
PfamPF065072.0E-26237315IPR010525Auxin response factor
PfamPF023092.9E-6555603IPR033389AUX/IAA domain
SuperFamilySSF542773.53E-11565643No hitNo description
PROSITE profilePS5174524.364567659IPR000270PB1 domain
PfamPF023091.7E-6607656IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MEKDDLYVEL WKLCAGPLVD VPKQGEMVYY FPQGHMEQLE ASMNQELKQK IPLFNLPSEI  60
PCLVVNIQLL AEQETDEVYA HITLQPTTDK SEPTSPLECE LEQPKPPVRS FCKILTASDT  120
STHGGFSVRR KHANECLPQL DMSEATPTQE LAAKDLHGYD WRFKHIFRGQ PRRHLLTTGW  180
STFVTSKRLV AGDAFVFLRG VDGDLRVGVR RHARQQSIMP SSVISSQSMH LGVLATASHA  240
VTAHSLFIVV YKPRTSQFII SKNKYVESVK NGFSVGKRFT MRFEGEDSER RFTGTVIGAG  300
DISSEWSNSK WRSLKVQWDE SATIPRPERV SPWEIEPFEP SSSVNLIQPV LKSKRPRPMD  360
PPANLVKLNA SVFWYSQMNN RCQIGHADNG SEVQGADTHD LSWIRGSKEC NNLINIGAGY  420
SSRLGPEGMW PSTQFLKMYH GSTEDGKTTR STSILSGCNS VVPTRPDNVP AVDQLGNTRN  480
MESPAGCRIF GIDFSKNLST MIHSGREPAS TSTAPVITST VLLREDAVCM VDKKQDSLIS  540
SQELTKHVTD LSQKVTSTKN GTAGSSRTRT KVQMQGVAVG RAVDLFTLSG YTELILELEK  600
MFDIKGELLA GNQWAIVYTD TEGDQMLAGN DPWSEFCKMA RKIIIYSSEE VKKLKPKSKV  660
AASALSLEGE GTLISSYQDL DCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-157433817355Auxin response factor 1
4ldw_A1e-157433817355Auxin response factor 1
4ldw_B1e-157433817355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353357KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818379.10.0PREDICTED: auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A2I4EG520.0A0A2I4EG52_JUGRE; Auxin response factor
STRINGVIT_15s0046g00290.t010.0(Vitis vinifera)
STRINGEOX956790.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]