PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0255.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 385aa    MW: 42591.2 Da    PI: 6.5069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0255.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14152203155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++ + ++ Lr+llP+a   ++++ + a+i+  A++Y+k+L+
  Kalax.0012s0255.1.p 152 QRMTHIAIERNRRRQMSDYLSVLRSLLPPA---YAERGDQASIVGGAIDYVKNLE 203
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.77E-12150207No hitNo description
SuperFamilySSF474594.58E-17151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.713151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEEGCCGGGE GGGPINLSAS FDGGVEPSAR SDFLTASLGL DDRMPFLQML HALDPSIIHS  60
LLKKNPTETE TQILPVDCCI THDTPELHSP VMSEGKNPTQ VSPDGTLEER GELNSVSECR  120
QDSSSQLSCG KMRKPRKHAK VVVENKKDVE KQRMTHIAIE RNRRRQMSDY LSVLRSLLPP  180
AYAERGDQAS IVGGAIDYVK NLEQLLQSLQ AQKRQRKVDE MRNRCCSNSM PLSPETSDGI  240
STSTSSSTAS LDEDCDMNSP LEKKADINIR VVQTHVNLHI GCDDMKQSEL IKLLIALERL  300
RLKILHLNIT SIHKSSFYSL SLNVEDECEL RSTEEISSSI EQLLNSINIY NGRRSSVTSK  360
KEDDAKMYGM PHHHPHGAAK KLNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152163RMTHIAIERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008244210.16e-65(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.15e-50bHLH family protein