PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0004.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 806aa MW: 87118.8 Da PI: 5.9145

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0004.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.7e-21	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Kalax.0013s0004.2.p 116 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 171 688999***********************************************999 PP
2	START	192.7	1.8e-60	323	547	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela++a++elvk+a+ +ep+W s e +n+de++++f++ + + +ea+r++g v+ ++ lve+l+d++ +W e+++ Kalax.0013s0004.2.p 323 ELALSAMNELVKLAQTDEPLWLPSLdggrEVLNRDEYTRTFTPCIGmkpngFMSEASRETGTVIINSLALVETLMDSN-RWAEMFPcvia 411 57899*********************9*********9988999999**********************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 + t++vissg g lqlm aelq+lsplv+ R++ f+R+++ql +g w++vdvS+ds ++ + ss+v ++lpSg+++++++ng Kalax.0013s0004.2.p 412 RTGTTDVISSGmggtrnGMLQLMHAELQVLSPLVSvREVNFLRFCKQLAEGAWAVVDVSIDSIRETSGISSYVSYRRLPSGCIVQDMPNG 501 *************************************************************999****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh++++++++h l+++l++sg+ +ga++wvatlqrqce+ Kalax.0013s0004.2.p 502 YSKVTWVEHAEYDDSSVHPLYKPLLSSGMGFGAQRWVATLQRQCEC 547 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-21	98	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-22	108	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	113	173	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	114	177	IPR001356	Homeobox domain
CDD	cd00086	1.96E-18	115	173	No hit	No description
Pfam	PF00046	2.1E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	46.264	314	550	IPR002913	START domain
SuperFamily	SSF55961	6.41E-34	315	547	No hit	No description
CDD	cd08875	1.73E-120	318	546	No hit	No description
SMART	SM00234	7.1E-47	323	547	IPR002913	START domain
Pfam	PF01852	2.4E-52	323	547	IPR002913	START domain
SuperFamily	SSF55961	1.05E-23	574	797	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MSTGAYLDEP TSGGGVGGGG GRVVVTDASY VVGDCSLSGG AITPMNKSMF NSSGLSLAIT 60 SLEGQGELSR MGENYAAAAV GGRRSREEEH ESRSGSDNMD GGSGDDLDGS DNPPRKKRYH 120 RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENS 180 MLRAENDKLR AENMSIKDAM RNAICTNCGG QAVIGDGSIE EQHLRIENVR LKDELDRVCG 240 LASKFLGRPV SSLASTSMTM PSSSLELGVG SSNCFANINA ALPMGTDFIG MMNPVEVVPS 300 SRSTLTNGLI GVDRSMERSL FLELALSAMN ELVKLAQTDE PLWLPSLDGG REVLNRDEYT 360 RTFTPCIGMK PNGFMSEASR ETGTVIINSL ALVETLMDSN RWAEMFPCVI ARTGTTDVIS 420 SGMGGTRNGM LQLMHAELQV LSPLVSVREV NFLRFCKQLA EGAWAVVDVS IDSIRETSGI 480 SSYVSYRRLP SGCIVQDMPN GYSKVTWVEH AEYDDSSVHP LYKPLLSSGM GFGAQRWVAT 540 LQRQCECLAI LMSSTVASRD HTAITASGRR SMLKLAQRMT NNFCAGVCAS SVHNWNKLNA 600 GNVGEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR VFDFLRDERL RSEWDILSNG 660 GPMQEMARIA KGQDHGNCVT LLRASAVNAN QSMLILQETC IDAAGSLVVY APVDTPAMHL 720 VMNGGDSAYV ALLPSGFAIV PDGPGPARSQ DGSGRAGGSL LTVAFQILVN SLPTAKLTVE 780 SIETVNNLIS CTVQKIKSAL HSETH*

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MSTGAYLDEP TSGGGVGGGG GRVVVTDASY VVGDCSLSGG AITPMNKSMF NSSGLSLAIT  60
SLEGQGELSR MGENYAAAAV GGRRSREEEH ESRSGSDNMD GGSGDDLDGS DNPPRKKRYH  120
RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENS  180
MLRAENDKLR AENMSIKDAM RNAICTNCGG QAVIGDGSIE EQHLRIENVR LKDELDRVCG  240
LASKFLGRPV SSLASTSMTM PSSSLELGVG SSNCFANINA ALPMGTDFIG MMNPVEVVPS  300
SRSTLTNGLI GVDRSMERSL FLELALSAMN ELVKLAQTDE PLWLPSLDGG REVLNRDEYT  360
RTFTPCIGMK PNGFMSEASR ETGTVIINSL ALVETLMDSN RWAEMFPCVI ARTGTTDVIS  420
SGMGGTRNGM LQLMHAELQV LSPLVSVREV NFLRFCKQLA EGAWAVVDVS IDSIRETSGI  480
SSYVSYRRLP SGCIVQDMPN GYSKVTWVEH AEYDDSSVHP LYKPLLSSGM GFGAQRWVAT  540
LQRQCECLAI LMSSTVASRD HTAITASGRR SMLKLAQRMT NNFCAGVCAS SVHNWNKLNA  600
GNVGEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR VFDFLRDERL RSEWDILSNG  660
GPMQEMARIA KGQDHGNCVT LLRASAVNAN QSMLILQETC IDAAGSLVVY APVDTPAMHL  720
VMNGGDSAYV ALLPSGFAIV PDGPGPARSQ DGSGRAGGSL LTVAFQILVN SLPTAKLTVE  780
SIETVNNLIS CTVQKIKSAL HSETH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661562.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A067JXS1	0.0	A0A067JXS1_JATCU; Uncharacterized protein
STRING	VIT_15s0048g02000.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0013s0004.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]