PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 343aa    MW: 38119.3 Da    PI: 9.8297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16169215455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  Kalax.0013s0039.1.p 169 VHNQSERKRRDRINQKMKTLQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 215
                          5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.339165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19168237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17169222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-16170219No hitNo description
SMARTSM003536.1E-17171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MYHCRVCFGY EVLGCGRRLN DYDQVAELTW ENGQLGFQGL APATHGAKPT WGTANETLES  60
IVQQGSTVFH HQQPQQHSNL NHIHYPPANT NPCSSFAASS TWLESDHRHA RVESLKRSSL  120
KESNTVIMTR ATEEDLVYHY GSDNKNEGHD SKGGAGRSSS TRRSRTAAVH NQSERKRRDR  180
INQKMKTLQK LVPNASKTDK ASMLDEVIKY LKQLQGQIQM MNYVRNMPPM MVPLAMQQQQ  240
NQMSLLARTG MNLNMGLMGM GGMLNMMHMP RSMPLQSAPH PSATPSTNAT FPPSFLMVPP  300
MIPTPPISQS MNTDLFNKMA AFCAQQANSR ATAIQEKTSP TS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ESLKRS
2173178ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571978.11e-74transcription factor PIF7 isoform X2
SwissprotQ8GZ381e-37UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061FXG34e-69A0A061FXG3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
TrEMBLA0A061G4L12e-69A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219716e-70(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]