PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0039.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 331aa    MW: 36811.7 Da    PI: 9.9879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0039.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16157203455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  Kalax.0013s0039.2.p 157 VHNQSERKRRDRINQKMKTLQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 203
                          5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.339153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17157210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-16158207No hitNo description
SMARTSM003536.1E-17159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPFYRLNDY DQVAELTWEN GQLGFQGLAP ATHGAKPTWG TANETLESIV QQGSTVFHHQ  60
QPQQHSNLNH IHYPPANTNP CSSFAASSTW LESDHRHARV ESLKRSSLKE SNTVIMTRAT  120
EEDLVYHYGS DNKNEGHDSK GGAGRSSSTR RSRTAAVHNQ SERKRRDRIN QKMKTLQKLV  180
PNASKTDKAS MLDEVIKYLK QLQGQIQMMN YVRNMPPMMV PLAMQQQQNQ MSLLARTGMN  240
LNMGLMGMGG MLNMMHMPRS MPLQSAPHPS ATPSTNATFP PSFLMVPPMI PTPPISQSMN  300
TDLFNKMAAF CAQQANSRAT AIQEKTSPTS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105ESLKRS
2161166ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571978.17e-76transcription factor PIF7 isoform X2
SwissprotQ8GZ383e-38UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061G4L12e-71A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219716e-72(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]