PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0109.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 521aa    MW: 58202.3 Da    PI: 4.9745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13294338655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kalax.0013s0109.1.p 294 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 338
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-166150IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.888288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-15290341No hitNo description
SuperFamilySSF474591.16E-17291350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-11293337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15295350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.392402480IPR002912ACT domain
CDDcd021160.00296403460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MLNFMDRLRP LVGSKGWDYC AVWRLNQDQR FLELMGCCCA GADDEQDKLK FLVSPPLPCR  60
DTVFQHQRTE CCDHLCHLPS SVPLNSDIYA EAFFSSQPRW LNVNLNTFSD PQAMAKEVVG  120
TQVLIPVLGG LVELFVAKQV AEDKNVVDLI AAQCAIPLEL DALLTSSLQT RTNPAEENPQ  180
PGAERNHASP SSSYQFHQPE ANNTNQQACE ISSPKGFSQQ FNCDSAAENE PRNIDAVMMS  240
GGSGSASDIP SQIKDGVRLE AGRSDSTSDC SDQIDDEDEA KCRRRNGKGQ SKNLEAERRR  300
RKKLNERLYK LRALVPIISK LDKASILVDA IDYMKQLKKQ VEELQKELEQ ESDNKGDQTP  360
AESVSEFVAP NTRNVANPMG HEKVQQMEPQ VEVTPVDGSK FFIRVFCEQK PGGFVRLLEA  420
LSSLGLEVTN VNVTSYRMLV SNVFQVEMTR DDIDDHHVAA DDLRKSLLEL TQIPVEAPWP  480
DPLPDTTSNM PEYGVRADNP FPHHHALLNH HTSPYHFHHN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282302RRRNGKGQSKNLEAERRRRKK
2296303ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841495.11e-142PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A2I4GCB41e-140A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEOX976291e-135(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-84bHLH family protein