PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0109.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 408aa    MW: 45206.5 Da    PI: 4.963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0109.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13181225655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kalax.0013s0109.2.p 181 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 225
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.888175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14177228No hitNo description
SuperFamilySSF474598.11E-18178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001286353No hitNo description
SuperFamilySSF550217.5E-5287355No hitNo description
PROSITE profilePS516719.392289367IPR002912ACT domain
CDDcd021160.00243290347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKEVVGTQV LIPVLGGLVE LFVAKQVAED KNVVDLIAAQ CAIPLELDAL LTSSLQTRTN  60
PAEENPQPGA ERNHASPSSS YQFHQPEANN TNQQACEISS PKGFSQQFNC DSAAENEPRN  120
IDAVMMSGGS GSASDIPSQI KDGVRLEAGR SDSTSDCSDQ IDDEDEAKCR RRNGKGQSKN  180
LEAERRRRKK LNERLYKLRA LVPIISKLDK ASILVDAIDY MKQLKKQVEE LQKELEQESD  240
NKGDQTPAES VSEFVAPNTR NVANPMGHEK VQQMEPQVEV TPVDGSKFFI RVFCEQKPGG  300
FVRLLEALSS LGLEVTNVNV TSYRMLVSNV FQVEMTRDDI DDHHVAADDL RKSLLELTQI  360
PVEAPWPDPL PDTTSNMPEY GVRADNPFPH HHALLNHHTS PYHFHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169189RRRNGKGQSKNLEAERRRRKK
2183190ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022969474.12e-95transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A2I4GCB41e-90A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEOX976292e-87(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-34bHLH family protein