PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0219.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 103aa MW: 11514.2 Da PI: 5.2174

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0219.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	47.9	5.3e-15	17	95	13	89
GAGA_bind 13 yyepa.aslkenlg.lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 y+p +++++ + +++m +++erda+ ernl lsek+a++a+rdma ++rd+a+aer+ a+ erd +++l+l en Kalax.0013s0219.1.p 17 EYKPFqDQVQQRASmKDIMVMVSERDAAFLERNLVLSEKRAVLAQRDMAVVERDAAIAERDIAIKERDRVMAHLQLLEN 95 55544334444443158*********************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.2E-6	23	91	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MDKGGPGRLQ YGPPKGEYKP FQDQVQQRAS MKDIMVMVSE RDAAFLERNL VLSEKRAVLA 60 QRDMAVVERD AAIAERDIAI KERDRVMAHL QLLENITDGD TA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275364.1	2e-22	protein BASIC PENTACYSTEINE6-like
Refseq	XP_006342016.1	2e-22	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_006342018.1	2e-22	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_015161877.1	2e-22	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Swissprot	Q8L999	9e-19	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A0V0I8A9	5e-21	A0A0V0I8A9_SOLCH; Uncharacterized protein
TrEMBL	H1ZN97	5e-21	H1ZN97_SOLTU; GAGA-binding transcriptional activator
STRING	PGSC0003DMT400009534	8e-22	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	6e-12	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Kalax.0013s0219.1.p