PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0266.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 1047aa MW: 114965 Da PI: 7.5839

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0266.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.3e-41	125	202	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kalax.0013s0266.1.p 125 TCQVESCMVDLSNAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 202 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-32	120	187	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.958	123	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	124	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-29	126	199	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.37E-6	791	941	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.3E-5	820	941	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.40E-5	834	941	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MARKRDLSYQ QQELMIDQPH HPSGGLNNSR DYWNSNRWNW DCTRFVAQQV DGDAMNLDTP 60 VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGCGN 120 GNHPTCQVES CMVDLSNAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD 180 EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLT ALARAQGNQD 240 NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQNGSSANS 300 SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT ESADTYQPDP RVLSKRTILD 360 FSSIGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS 420 SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTM SFDLFGGSKK 480 GVEVDFCKGS PNQVGYASPV SAYSPSSSTC GAQDLTGRIL FKLFDKDPSH LPVALRSEIL 540 AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEKNLL EQVSRLLQRT DIDIWREGRF 600 LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH 660 CTYMGGYITK DICNTTVHGS TCDGTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII 720 ADSTICQELR QLEFEFETDL RLNDAMSEVQ ESDVLWPKAE VLHFLNELGW LFQTKDSSNT 780 LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGNI PVEVSEMVSG IQLLHRAVKR 840 RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CAGPGGLTPL HIAACTSGLE DVVDALTNDP 900 TELGLCCWES QLDESGRSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEDNETMEQA 960 WVEPSPAASH VTKHKAVSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV 1020 CLYFRGYPYT GMVSPFTWEK LDYATI*

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MARKRDLSYQ QQELMIDQPH HPSGGLNNSR DYWNSNRWNW DCTRFVAQQV DGDAMNLDTP  60
VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGCGN  120
GNHPTCQVES CMVDLSNAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD  180
EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLT ALARAQGNQD  240
NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQNGSSANS  300
SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT ESADTYQPDP RVLSKRTILD  360
FSSIGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS  420
SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTM SFDLFGGSKK  480
GVEVDFCKGS PNQVGYASPV SAYSPSSSTC GAQDLTGRIL FKLFDKDPSH LPVALRSEIL  540
AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEKNLL EQVSRLLQRT DIDIWREGRF  600
LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH  660
CTYMGGYITK DICNTTVHGS TCDGTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII  720
ADSTICQELR QLEFEFETDL RLNDAMSEVQ ESDVLWPKAE VLHFLNELGW LFQTKDSSNT  780
LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGNI PVEVSEMVSG IQLLHRAVKR  840
RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CAGPGGLTPL HIAACTSGLE DVVDALTNDP  900
TELGLCCWES QLDESGRSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEDNETMEQA  960
WVEPSPAASH VTKHKAVSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV  1020
CLYFRGYPYT GMVSPFTWEK LDYATI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-28	116	199	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	835	840	RAVKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372667.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	F6I6X1	0.0	F6I6X1_VITVI; Uncharacterized protein
STRING	XP_009372667.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0013s0266.1.p