PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0275.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 349aa    MW: 38642.3 Da    PI: 7.6181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0275.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10185232455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+ l+P +     +K   Ka iL + ++Y++sLq
  Kalax.0013s0275.1.p 185 SHSLAERVRRERISERMKMLQALVPGC-----EKvTGKALILDEIINYVQSLQ 232
                          8*************************9.....6769****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-17179248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-11179236No hitNo description
Gene3DG3DSA:4.10.280.103.8E-16181244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAYSYQPHH FLLSSTLSPS TPFDISGFVN EGNITSKNST VAFANNLVSA EFLPMEVFHE  60
GFSDAAGVYQ SSCHDHSSKM HSAASSVDME KQVEEMGEQV TQKLTPCNNG HEEKKKTREG  120
SSLDSKRGKL QGGKAKKQKK SDNRQNVVKE KKPKVDKKNQ KQEGSEDAQK DYIHVRARRG  180
QATDSHSLAE RVRRERISER MKMLQALVPG CEKVTGKALI LDEIINYVQS LQNQIEFLSM  240
KLASFNPIYT NFVMDLDAAM LRQETLTRLA ASQPSGSSQQ CSPTAVNYNS STTTFTTPTA  300
VGYHPLIEAS LFLQQEAAEN LTWDQLDTQT QNLMNQFGGL ANAICSFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-47bHLH family protein