PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0014s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 356aa    MW: 40255.8 Da    PI: 9.7355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0014s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-16783686
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                         +++d ++++ l lp++f e++g k ++   ++l+ ++g +W+v++  +k+s++++l++GW +F+++ g+k g f+vF +  
  Kalax.0014s0020.1.p  7 VTADITTRSKLKLPRRFGERCGAKVPG--NVRLQVPTGATWRVEV--KKNSNGVWLGEGWFKFAESLGVKYGHFLVFDYYA 83
                         5789999999***********888666..6***************..******************************9754 PP
2B372.35.8e-23256347699
                          ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +p  + ++++l +p +f+e++ +  k   k+ tl++ +gr+W+vk++  +++ r ++t+GW +Fv++ngLk+gD+++F+l++  e   +v
  Kalax.0014s0020.1.p 256 SPDGTARQCQLLVPMPFIEAYfN-LKI--KDATLRTDDGRKWSVKYRLARYRPRSYFTSGWTQFVRDNGLKAGDVCLFELIRGAENAIKV 342
                          55667788*************53.433..489****************99999999*************************986666899 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                           +fr+
  Kalax.0014s0020.1.p 343 VIFRA 347
                          88885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.562296IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-17294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-14390No hitNo description
Gene3DG3DSA:2.40.330.107.6E-17395IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-12396IPR003340B3 DNA binding domain
PfamPF023621.7E-13783IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-23234346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-21241346IPR015300DNA-binding pseudobarrel domain
CDDcd100179.16E-24249346No hitNo description
PROSITE profilePS5086315.524251348IPR003340B3 DNA binding domain
SMARTSM010195.2E-17251348IPR003340B3 DNA binding domain
PfamPF023623.8E-21256347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKFFRIVTAD ITTRSKLKLP RRFGERCGAK VPGNVRLQVP TGATWRVEVK KNSNGVWLGE  60
GWFKFAESLG VKYGHFLVFD YYAVSAVFHV VAIGMSAVET EYPTVSSIDD DDDQSGRNPR  120
LSNLKRRKIE KDDDDDDDDV VILKDDANLG RSKPQKCQAP GKKAKASKYE VDQSMCGNGS  180
VRSDDGDHTT TKRRGKFERE IILNRERMIQ CIVQGRGRNN RANDQAEKAI ERAKSFKADE  240
PVFIIALSPC YVTRESPDGT ARQCQLLVPM PFIEAYFNLK IKDATLRTDD GRKWSVKYRL  300
ARYRPRSYFT SGWTQFVRDN GLKAGDVCLF ELIRGAENAI KVVIFRAISE DEAVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-27B3 family protein