PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0014s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 134aa    MW: 14412.4 Da    PI: 8.5879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0014s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.64.9e-144165226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         ++ +C+++++tG Ck+G+rCkF+H+
  Kalax.0014s0046.1.p 41 GQTECDYYMKTGVCKFGERCKFHHP 65
                         6789********************9 PP
2zf-CCCH37.63.6e-1295116627
                          -SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                          C+++++t tCk+G++CkF H+p
  Kalax.0014s0046.1.p  95 CPYYMKTSTCKFGATCKFDHPP 116
                          ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-83868IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-73966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8783967IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-114165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-64565IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-589116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46989117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-595114IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-995116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSAVDNLSNG NPAVSALQSF DPVFVTSLLR SATIVYPQRP GQTECDYYMK TGVCKFGERC  60
KFHHPVDRSA PSTKAQETVK LTPAGYPRRE GALTCPYYMK TSTCKFGATC KFDHPPPAEV  120
LAMAAAQANS NGN*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354792.11e-57zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_027354795.18e-58zinc finger CCCH domain-containing protein 37 isoform X4
SwissprotQ941Q31e-46C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A371GTK62e-56A0A371GTK6_MUCPR; Zinc finger CCCH domain-containing protein 37 (Fragment)
STRINGGLYMA15G30265.19e-56(Glycine max)
STRINGXP_006422335.16e-56(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-49floral homeotic protein (HUA1)