PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0014s0197.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 172aa    MW: 18597.1 Da    PI: 4.2855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0014s0197.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.35.3e-19319041100
               DUF260  41 nvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                           +++ +++lpe +r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+ ++e
  Kalax.0014s0197.2.p  31 SITEKIQELPEAQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKSQAE 90 
                          68999**************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.08191IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-173188IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKLDFTHKVQ KTDGNLKDAD TLLTHGNRCG SITEKIQELP EAQRADAVSS MVYEASARIR  60
DPVYGCAGAI CQLQKQVSEL QAQLAKSQAE IVNMQAQQAQ LVALICMEMS SVQPSKTTVK  120
TAPDQSFDCE GFIGSPLVDD FYGGLGFEIE SDGMGSLGWE TPLWPDVMMT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-16319351113LOB family transfactor Ramosa2.1
5ly0_B3e-16319351113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028775843.12e-46LOB domain-containing protein 1-like
RefseqXP_028808060.12e-46LOB domain-containing protein 1-like
SwissprotQ9SK082e-32LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A371HWE49e-46A0A371HWE4_MUCPR; LOB domain-containing protein 1
STRINGAES674101e-45(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-34LOB domain-containing protein 11