PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0015s0188.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 567aa MW: 62227.2 Da PI: 6.7302

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0015s0188.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	457	489	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++ L++++ + +K + a++L++A+ YIk q Kalax.0015s0188.1.p 457 EKISALQQIVSPY-----GKTDTASVLQEAIGYIKFHQ 489 5789999999998.....9****************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-6	457	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-8	457	501	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.24E-4	457	493	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MADQDCNNIN LLPLALSSSP SSWWDLHHHA TPTPSITSWN NTTAAAAAAA SLWENHNHSN 60 SSPCDQEDVS ISVSNHSSLT VDDSSHRLVE PSASSSNNII GQPTTENNSH LWSQLLLGVG 120 GSQEMHDEMG ENLLNELSLK NFSGGMFEPS ACSDYLKKFD SHQHEKWADS NGDQFRNSNP 180 ATAANSSFTR NFDNTNVGYN GDTNLAENND DQRSLIKLSS SNLVNSWSIA PPDLSQMTFH 240 HLVPNPCNNN ILPSVDQYLH PDITGDQTKQ NLSYQPQLLD MAPNSIYDCA SYGVSQTRSG 300 NDHYEESDQV GSSQASLFPK VFINNFESVY GSTGGNWRPR ESSIHSQHGF TPSVIDPFNN 360 SRSRSLSKPL LKSLSLLDTR KQQGTNLTNS LINNKSNGRG QGASANDGKK KRSQEASQSS 420 GSSSRKPKHE SNSYNPSTPS SFTKTTTQTL KVKIAAEKIS ALQQIVSPYG KTDTASVLQE 480 AIGYIKFHQE QVQLLSNPYL KSNVSKLQEA WGSLDRKYEK GEKNKLKVVD LKSKGLCLVP 540 TSSIPQVYKD NSGPDYWPTY RGCLYR*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MADQDCNNIN LLPLALSSSP SSWWDLHHHA TPTPSITSWN NTTAAAAAAA SLWENHNHSN  60
SSPCDQEDVS ISVSNHSSLT VDDSSHRLVE PSASSSNNII GQPTTENNSH LWSQLLLGVG  120
GSQEMHDEMG ENLLNELSLK NFSGGMFEPS ACSDYLKKFD SHQHEKWADS NGDQFRNSNP  180
ATAANSSFTR NFDNTNVGYN GDTNLAENND DQRSLIKLSS SNLVNSWSIA PPDLSQMTFH  240
HLVPNPCNNN ILPSVDQYLH PDITGDQTKQ NLSYQPQLLD MAPNSIYDCA SYGVSQTRSG  300
NDHYEESDQV GSSQASLFPK VFINNFESVY GSTGGNWRPR ESSIHSQHGF TPSVIDPFNN  360
SRSRSLSKPL LKSLSLLDTR KQQGTNLTNS LINNKSNGRG QGASANDGKK KRSQEASQSS  420
GSSSRKPKHE SNSYNPSTPS SFTKTTTQTL KVKIAAEKIS ALQQIVSPYG KTDTASVLQE  480
AIGYIKFHQE QVQLLSNPYL KSNVSKLQEA WGSLDRKYEK GEKNKLKVVD LKSKGLCLVP  540
TSSIPQVYKD NSGPDYWPTY RGCLYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	8e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0015s0188.1.p