PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0016s0053.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 98aa    MW: 11162.8 Da    PI: 9.8936
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0016s0053.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1491.9e-152095276
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkw 76
                         f+ eY+ ++GF+ r+ + ++s+++g   ++ fvC+kegkr e+++   +++r+raetrt+Ck k+ +++e    gk+
  Kalax.0016s0053.2.p 20 FWTEYGATTGFTPRRFYCHTSRKDGLPSNAVFVCNKEGKRGENSDL-MTKKRERAETRTSCKVKFGIHREPsaFGKY 95
                         9*****************************************9998.99******************9987444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-112095IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MGMIPKLGMD FDSVEDAWVF WTEYGATTGF TPRRFYCHTS RKDGLPSNAV FVCNKEGKRG  60
ENSDLMTKKR ERAETRTSCK VKFGIHREPS AFGKYRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-11FAR1 family protein