PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0016s0142.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 381aa MW: 42395.9 Da PI: 8.6973

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0016s0142.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.1	2.5e-08	58	96	5	42
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kst 42 + +C +CGn a+ C ++ C+ CC C hv k t Kalax.0016s0142.1.p 58 KPKCIQCGNVARSRCPYQSCKSCCSKAQNPCYIHVlKQT 96 568*******************************95444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-5	60	100	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MATPSPSQSI NSTDTGVSQP AASAASASAS ALPSTAPISR LHRVDAPAGP KTLRGLNKPK 60 CIQCGNVARS RCPYQSCKSC CSKAQNPCYI HVLKQTATVP DKAPSAGSPK VDEQSNEPSP 120 SGPSHRVPSY RQLSSQFSQF NNLNLQQSRK PLTRKEAFAI NEWRYAKLKE YRERDIEAEN 180 DAFDRYIQNI RLLEDVLSAE ELYADEPIES NLEAVAEESN EVVVSRLKLR LKSNSVKAFN 240 AKDKLRDVVD KGLRQFLKRE LNVGDYDIQD FQNQKRRAKS LRDDRARALN DLLDKMNKAR 300 TMEDLEACME LKSQLFKQLP KKHQMEVDPG KTSEGKATYE AIPDQQPSIS IPKLVKTVNI 360 DQETLGSIDL HFASLEHIGL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MATPSPSQSI NSTDTGVSQP AASAASASAS ALPSTAPISR LHRVDAPAGP KTLRGLNKPK  60
CIQCGNVARS RCPYQSCKSC CSKAQNPCYI HVLKQTATVP DKAPSAGSPK VDEQSNEPSP  120
SGPSHRVPSY RQLSSQFSQF NNLNLQQSRK PLTRKEAFAI NEWRYAKLKE YRERDIEAEN  180
DAFDRYIQNI RLLEDVLSAE ELYADEPIES NLEAVAEESN EVVVSRLKLR LKSNSVKAFN  240
AKDKLRDVVD KGLRQFLKRE LNVGDYDIQD FQNQKRRAKS LRDDRARALN DLLDKMNKAR  300
TMEDLEACME LKSQLFKQLP KKHQMEVDPG KTSEGKATYE AIPDQQPSIS IPKLVKTVNI  360
DQETLGSIDL HFASLEHIGL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369678.1	1e-122	PREDICTED: uncharacterized protein LOC103959065
TrEMBL	A0A315A1E8	1e-127	A0A315A1E8_PRUYE; Uncharacterized protein
STRING	XP_009369678.1	1e-122	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-69

Link Out ? help Back to Top
Phytozome	Kalax.0016s0142.1.p