PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0016s0150.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 452aa MW: 50882.1 Da PI: 10.0531

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0016s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.8	1.2e-17	23	109	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e+laLi+ +r+++ +lrrg l+ ++W++v++++ r+ +s+ qC++k+e+l++ry+++k++ + s +++f+ Kalax.0016s0150.1.p 23 CWTHDETLALIDTYRDRWIALRRGYLRTADWDAVASAVaqrcRHVTPPKSSDQCRHKMEKLRQRYRAEKQRCVAFPGRFFSAWVFFK 109 8*******************************99997765666668999****************987665555555666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-17	22	111	No hit	No description
PROSITE profile	PS50090	6.156	24	84	IPR017877	Myb-like domain
SMART	SM00595	5.5E-7	31	119	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSSASTPALP PPPATTRKVP LPCWTHDETL ALIDTYRDRW IALRRGYLRT ADWDAVASAV 60 AQRCRHVTPP KSSDQCRHKM EKLRQRYRAE KQRCVAFPGR FFSAWVFFKV LSFLDDGGGS 120 AQTKKRAAEA KAVDPVRQLS SDDGFFLTAL GDRKFTIDLK TFAKIDDQIQ NSSFGIRRNV 180 PSPPEQNIEP SMNRYASGLN HSFSRDDVDD DLHEQISLHK GSFIRPDKAG TAAGYAGRNL 240 VFDVDGGFNL SGGVSGKLHS SMKFVDSKPK ITPNHHQAMG DDGEGVDPLA EMATSIKLLG 300 DGFLKMEKMR MEMAVEFEKA RMEVELKRNE LIMESQRRIV DAFMRATKRK KTKKEKLSLL 360 AITITGFSMF VDWLRKLDVV IAVASLKKGE NVARGKHIRV EVTEPDRTGR FDREPDLVPV 420 RFEINTGVHT EPEQNRINRP VFYKIGEPDR S*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSSASTPALP PPPATTRKVP LPCWTHDETL ALIDTYRDRW IALRRGYLRT ADWDAVASAV  60
AQRCRHVTPP KSSDQCRHKM EKLRQRYRAE KQRCVAFPGR FFSAWVFFKV LSFLDDGGGS  120
AQTKKRAAEA KAVDPVRQLS SDDGFFLTAL GDRKFTIDLK TFAKIDDQIQ NSSFGIRRNV  180
PSPPEQNIEP SMNRYASGLN HSFSRDDVDD DLHEQISLHK GSFIRPDKAG TAAGYAGRNL  240
VFDVDGGFNL SGGVSGKLHS SMKFVDSKPK ITPNHHQAMG DDGEGVDPLA EMATSIKLLG  300
DGFLKMEKMR MEMAVEFEKA RMEVELKRNE LIMESQRRIV DAFMRATKRK KTKKEKLSLL  360
AITITGFSMF VDWLRKLDVV IAVASLKKGE NVARGKHIRV EVTEPDRTGR FDREPDLVPV  420
RFEINTGVHT EPEQNRINRP VFYKIGEPDR S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0016s0150.1.p