PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0016s0221.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 351aa MW: 38944.9 Da PI: 6.2247

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0016s0221.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.4	4.4e-26	255	304	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl yF+lpi++AA eLgvc+Tv+K+iCR++G+ RWPhRkiksl Kalax.0016s0221.1.p 255 SRMTLHDLIDYFHLPIEKAAEELGVCTTVVKKICRKHGLGRWPHRKIKSL 304 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.44	244	324	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-24	257	304	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTDPKAVVPY HDPHDADIAV LSGNLLLDFS DEFTLTLDEL LNPAPVASHS DIDFSVLNPS 60 NDPYVQEILN DFIDDPIGDS APDASVSGQI DIFQPDDFSY TEAGPPLMIH NAPFSCASCA 120 VLGEMIHTDG NEVSKVEIHG LLGMVDHAVL QLFRRPHSPP TCELVDFCHM DPESVKQSLV 180 AYCEDRRLAG FVLVEAPSSV SHSNRDAHQN TQAQQHPVHN VAGRFRAEPQ QRQKGYLNAA 240 ILSKTTLAVQ RERSSRMTLH DLIDYFHLPI EKAAEELGVC TTVVKKICRK HGLGRWPHRK 300 IKSLKRQVEA LKHNLRNASD GRDRARIQRD IDRAAQQIDN IRKEAAAGRL *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTDPKAVVPY HDPHDADIAV LSGNLLLDFS DEFTLTLDEL LNPAPVASHS DIDFSVLNPS  60
NDPYVQEILN DFIDDPIGDS APDASVSGQI DIFQPDDFSY TEAGPPLMIH NAPFSCASCA  120
VLGEMIHTDG NEVSKVEIHG LLGMVDHAVL QLFRRPHSPP TCELVDFCHM DPESVKQSLV  180
AYCEDRRLAG FVLVEAPSSV SHSNRDAHQN TQAQQHPVHN VAGRFRAEPQ QRQKGYLNAA  240
ILSKTTLAVQ RERSSRMTLH DLIDYFHLPI EKAAEELGVC TTVVKKICRK HGLGRWPHRK  300
IKSLKRQVEA LKHNLRNASD GRDRARIQRD IDRAAQQIDN IRKEAAAGRL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	6e-13	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0016s0221.1.p