PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0016s0241.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 190aa MW: 20865.1 Da PI: 9.6014

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0016s0241.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.6	4.2e-33	112	168	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hAlrR+Rg+gGrF Kalax.0016s0241.1.p 112 EEPVFVNAKQYHGILRRRQSRAKAESENKL-AKSRKPYLHESRHLHALRRARGCGGRF 168 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-36	110	171	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.283	111	171	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.7E-28	113	168	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-23	114	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	116	136	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.7E-23	145	168	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTSTVHHSDH NDQTEGQQKQ SEHGIHAAAA GTGISHPDIT NIANVPFPTP SHLGVGHAQA 60 AYPFPDPYYR SIFTSHEAQP YPAQPYSPQP MVHMQLMGIQ QAGLPLPSDV VEEPVFVNAK 120 QYHGILRRRQ SRAKAESENK LAKSRKPYLH ESRHLHALRR ARGCGGRFLN AKKNENSQQN 180 ESTSGGSSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	111	176	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655736.1	1e-90	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-56	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	D7TKH6	3e-89	D7TKH6_VITVI; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	4e-90	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-56	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Kalax.0016s0241.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]