PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0017s0037.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 264aa MW: 27963.1 Da PI: 10.8738

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0017s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.9e-36	40	137	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ a++ + + +ss + Kalax.0017s0037.1.p 40 PRKASKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVAGTLQIPTTSSSRPdpkd 129 56789*********************************************************8888854432222222222222223333 PP TCP 89 .......k 89 + Kalax.0017s0037.1.p 130 llpgqveS 137 33333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-30	43	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.063	44	98	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGSVQKPELD RGADVTVTAS TAVLMKEEPF GEATKPAVPP RKASKDRHTK VEGRGRRIRM 60 PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG TGTVPAIAMS VAGTLQIPTT 120 SSSRPDPKDL LPGQVESKKR KRVGDTFPTA TDANAAITAS SSSLKTAFAP PQVVSSRPGM 180 VPMWAIPSNA VWMVPLATNQ QPIWALSPTP TPLVTLAARP ISSAPPPPSS ASTKTTPPSS 240 STRTHPLRDL SLEIRDKTEL HLL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00638	PBM	Transfer from Lj0g3v0004489	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582875.2	9e-71	LOW QUALITY PROTEIN: transcription factor TCP9
Swissprot	Q9LT89	6e-59	TCP19_ARATH; Transcription factor TCP19
TrEMBL	F6I360	6e-71	F6I360_VITVI; Uncharacterized protein
STRING	VIT_15s0048g01150.t01	1e-71	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	7e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0017s0037.1.p