PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0017s0108.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 224aa MW: 25422 Da PI: 9.3766

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0017s0108.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	41	90	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++ +++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Kalax.0017s0108.1.p 41 KVLTRKMISQYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 90 77999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.189	23	111	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-22	43	90	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAAGGWPEFI SGFNDNEIRD VEAPGKKRAR KVKEEQIRSS KVLTRKMISQ YFYMPITQAA 60 KELNIGLTLL KKRCRELGIR RWPHRKLMSL QTLITNVQEL GRDEGEGSDE KLKMAVEVLE 120 RERKMMEELP DMQLEDKTKK LRQACFKANY KKRKMVGNGG ASNNGGSSAQ WNYSFRCGGS 180 RSCTTSLSSS YSGIKYLEDE EDDEMRSLLS DCFSSSDSNS LLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287140.1	1e-74	protein RKD1
Swissprot	Q9M9U9	4e-54	RKD1_ARATH; Protein RKD1
TrEMBL	A0A061FXS1	8e-68	A0A061FXS1_THECC; RWP-RK domain-containing protein, putative
TrEMBL	F6GT76	2e-68	F6GT76_VITVI; Uncharacterized protein
STRING	VIT_17s0000g06250.t01	3e-69	(Vitis vinifera)
STRING	EOY21863	1e-68	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-55	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0017s0108.1.p