PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0140.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 331aa    MW: 36121.7 Da    PI: 6.5759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0140.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.3e-14134180354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+Er+RR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Kalax.0017s0140.2.p 134 KSHSEAERKRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 180
                          79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.774131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-15134183No hitNo description
SuperFamilySSF474591.57E-14135188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15135191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-5218280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQSQNMNNSN MMMTSSDHHV YGGGGLIYPS EVSPILPWSL PQVHPFLPQP PYGPANSFSV  60
FNRSRAGHPQ HQFHNSLQFA YDGIGPSSDH HNLRLLSEAL GPVMNQPGVS PFGGELGKMT  120
AQEIMDAKAL AASKSHSEAE RKRRERINNH LAKLRSLLPS TTKTDKASLL AEVIQHVKEL  180
KRQTATISET AMVPTEADEL TVDAADDEYY GKLVIKASIC CEDRPDLLPD LIKTLKALKL  240
KTLKAEITTL GGRVKNVLFI TGEDHDHCEE GEEMQMQYSV SSIQEVLRGV MEKGGGGSED  300
GSAGSVKRQR TTNSNDASNM NISMLENRSG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297146.11e-130PREDICTED: transcription factor bHLH30
RefseqXP_011462943.11e-130PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y17e-98BH030_ARATH; Transcription factor bHLH30
TrEMBLW9R4021e-119W9R402_9ROSA; Uncharacterized protein
STRINGXP_004297146.11e-129(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]