PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0175.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 627aa    MW: 68144.5 Da    PI: 5.4652
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0175.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.86.7e-30183236155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +pr++WtpeLH++Fv+av+qL G++kA+Pk+il++m+v+gLt+e+v+SHLQkYR+
  Kalax.0017s0175.2.p 183 RPRVVWTPELHRKFVSAVNQL-GIDKAVPKKILDVMDVEGLTRENVASHLQKYRM 236
                          59*******************.********************************8 PP
2Response_reg60.96.5e-212110625109
                          EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          +v+++  ++eale+l+e++  +D++++D++mp++dG++ll++i  e  +lp+i+++ ++ + ++ + ++ Ga d+l Kp+  ee+ +
  Kalax.0017s0175.2.p  21 SVTTTLYAREALEMLRENKrmYDIVITDVQMPDIDGFQLLETIGLEM-DLPVIMMSIYDHQGYVSRGVHHGAVDYLLKPVRLEEIQN 106
                          578888899******999999**********************6654.8**********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011029.61112IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.2E-126108IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363925.3E-11816625IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-2920119No hitNo description
SuperFamilySSF521721.99E-2420119IPR011006CheY-like superfamily
PfamPF000722.6E-1721106IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.27E-2121112No hitNo description
Gene3DG3DSA:1.10.10.602.4E-31180241IPR009057Homeodomain-like
PROSITE profilePS5129412.609180239IPR017930Myb domain
SuperFamilySSF466891.25E-20181240IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-25184236IPR006447Myb domain, plants
PfamPF002491.6E-7185235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MPLCMSHLLI CDCHFCSVEV SVTTTLYARE ALEMLRENKR MYDIVITDVQ MPDIDGFQLL  60
ETIGLEMDLP VIMMSIYDHQ GYVSRGVHHG AVDYLLKPVR LEEIQNIWQH VLRKRKGLDK  120
GKKVVTQDKS SPGAGNGAVA NSIASAGDTS DKRGRDPSDK DDEDYEEEDD SGRENEEQTS  180
QKRPRVVWTP ELHRKFVSAV NQLGIDKAVP KKILDVMDVE GLTRENVASH LQKYRMYLKR  240
ISNGNPQQDM FRALGGRHAL DAMGYRGGRL HNSLLSGYPP SLSGILSGRV NSSNGVNFRS  300
ISSSDLIQSG QNLRNSINPL AKPNVMPSLQ NGSLFQGMQG GFEQDPTQAS KAMTQLADFN  360
PGLGATGLRV SENLMDPKVV LNGSSSRKML PAPSQFSQTG ASPVPGALRI GGMPGAPSNN  420
AGMMNHSGTS DSWKSAAQFP QSSFQMGGSG SENGTFTQDQ HLPINNNAMN GIASTGIQPQ  480
LLGFPQMLAP LRNSNIGMQG ELGMHNAEHI KQQEYTQELN NLFGSLNPIM TSGGSIMGSM  540
GTDQNHLVAN GGNFVGQQTG ILGPDPNFKP SNDSFVPEQA NLPQDDFIPN NVESLDEIMN  600
TMIRRDNNGA SSLFMDGDFN FDVEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25179242164ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.18e-70response regulator 18