PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0018s0184.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 204aa MW: 22814.1 Da PI: 8.9495

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0018s0184.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	222.3	1.4e-68	10	171	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q + ++l++ + +++ + + +++++ + ++s+ t+ Kalax.0018s0184.2.p 10 GPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSALSWQDLHHYHQLTQAPNYLNGGQDCRIDNLGSSSKITN 99 589******************************************9999999999999999999999999999999999888888887 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++++ ++ e v+rPPek+qrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Kalax.0018s0184.2.p 100 KTMMRVPAQKPTEE---RVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 171 77766554444333...469***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-71	11	171	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-8	110	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	119	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGSSCVDVVG PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCTNLW SVNMAAAFQS 60 ALSWQDLHHY HQLTQAPNYL NGGQDCRIDN LGSSSKITNK TMMRVPAQKP TEERVVNRPP 120 EKKQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNNNQ 180 PTRFDQNIAG KRLMSKAAGL MKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450896.1	1e-100	axial regulator YABBY 5 isoform X2
Refseq	XP_006475869.1	1e-100	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	7e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067GY39	2e-98	A0A067GY39_CITSI; Uncharacterized protein
TrEMBL	V4UP20	2e-98	V4UP20_9ROSI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	3e-97	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-83	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0018s0184.2.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]