PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0019s0114.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 248aa    MW: 28771.4 Da    PI: 10.393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0019s0114.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33.1e-53732051128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Kalax.0019s0114.1.p  73 LPLGFRFRPTDEELINHYLRLKINGRDSEV-QVIPEIDVCRWEPWDLPdlSVIKTGDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGK 161
                          699************************999.99**************96448888999******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++k    +++l+g+kktLvfy+grap+ge+t+W+mheyr+
  Kalax.0019s0114.1.p 162 DRTIKAKklpaTTNLIGMKKTLVFYRGRAPRGERTHWIMHEYRA 205
                          ******988888888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5860212IPR003441NAC domain
PROSITE profilePS5100554.45373231IPR003441NAC domain
PfamPF023651.7E-2874204IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKMIKRSTEE RKSKIEKSKS KEIRRRRRRR NKVVGKAESI IARRDYSVSE TTSELGFCCW  60
ADRIMAILSV EALPLGFRFR PTDEELINHY LRLKINGRDS EVQVIPEIDV CRWEPWDLPD  120
LSVIKTGDPE WFFFCPRDRK YPNGHRSNRA TEAGYWKATG KDRTIKAKKL PATTNLIGMK  180
KTLVFYRGRA PRGERTHWIM HEYRATEKDL DGTGPGQVKT PLLLLFRLYF PVPCGGLLYI  240
SAYCLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-456820712144NO APICAL MERISTEM PROTEIN
1ut4_B5e-456820712144NO APICAL MERISTEM PROTEIN
1ut7_A5e-456820712144NO APICAL MERISTEM PROTEIN
1ut7_B5e-456820712144NO APICAL MERISTEM PROTEIN
3swm_A5e-456820715147NAC domain-containing protein 19
3swm_B5e-456820715147NAC domain-containing protein 19
3swm_C5e-456820715147NAC domain-containing protein 19
3swm_D5e-456820715147NAC domain-containing protein 19
3swp_A5e-456820715147NAC domain-containing protein 19
3swp_B5e-456820715147NAC domain-containing protein 19
3swp_C5e-456820715147NAC domain-containing protein 19
3swp_D5e-456820715147NAC domain-containing protein 19
4dul_A5e-456820712144NAC domain-containing protein 19
4dul_B5e-456820712144NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056056.18e-96PREDICTED: protein NTM1-like 9 isoform X2
RefseqXP_018730015.18e-96PREDICTED: protein NTM1-like 9 isoform X1
RefseqXP_024437069.11e-95protein NTM1-like 9 isoform X2
SwissprotB5X5701e-91NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A059C3W83e-95A0A059C3W8_EUCGR; Uncharacterized protein
STRINGXP_010056056.13e-95(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-93NAC 014