PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0019s0121.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 270aa    MW: 30008.1 Da    PI: 4.7357
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0019s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix107.49.8e-3429113186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k evlaLi++r+++e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf +l+
  Kalax.0019s0121.1.p  29 RWPKVEVLALIKLRSNLENRYQEAGPKGPLWEEISAGMQRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFYELD 113
                          8*********************************************************************8.99999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3992286IPR017877Myb-like domain
SMARTSM007170.00122688IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-42785IPR009057Homeodomain-like
CDDcd122036.87E-312893No hitNo description
PfamPF138373.2E-2428115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAVPERQIPP QDPASGGGGW SSSEAASSRW PKVEVLALIK LRSNLENRYQ EAGPKGPLWE  60
EISAGMQRMG YNRSSKRCKE KWENINKYFK KVKESNKKRP EDAKTCPYFY ELDAIYQRKI  120
LGGANTGSSS SSMVPFQQQQ PQQSLALEGS TTTAKHQDTS PHNGGLPDDI FGDRGGHARA  180
GGESTKPEDI MVELMKQQQV QQLLNLEDYE QQKMDELGDT TENVEEDQGE DEDESEENGM  240
AYKIDFQRPP TNNKNGGNNG APSFITMVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624875.12e-76trihelix transcription factor GTL1 isoform X4
TrEMBLG8G9Q99e-76G8G9Q9_POPCN; GTL1
STRINGcassava4.1_002081m8e-75(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-50Trihelix family protein