PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0019s0168.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 271aa MW: 30746.7 Da PI: 8.0698

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0019s0168.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9.1e-19	108	195	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ + +l lp +f+++h k e+ ++tlede+g++ k+ ++ + l++GW++F+ +++L +gD +vF+l++ ++f Kalax.0019s0168.1.p 108 FVKPMSQSHVTGRFWLGLPQRFCKAHLPK--EDEMITLEDEDGNESPSKY--LANRTG--LSGGWRGFALDHELVDGDALVFQLIRPTKF 191 89**********************533..4569***********..555444..***********************97777 PP ..EEEE CS B3 91 elvvkv 96 +v Kalax.0019s0168.1.p 192 --KVYT 195 ..4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-24	102	199	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-21	104	197	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.15E-27	106	194	No hit	No description
Pfam	PF02362	3.3E-17	108	195	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	108	199	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-24	108	199	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MVASATSNYE KLRRQRLKEN KKRMEELNLL NLSKSLYAAT PKPSPAKHRK PKSARKEVDL 60 FAVRRSCRTA GKPRPDYKEV YASHESRLSA VKRAEQLESE LGFEYPCFVK PMSQSHVTGR 120 FWLGLPQRFC KAHLPKEDEM ITLEDEDGNE SPSKYLANRT GLSGGWRGFA LDHELVDGDA 180 LVFQLIRPTK FKVYTVRVNE HENGDESNED VADADGDDDV VLLKPAPIVK PRKVAKPSPG 240 TRRSRRKKSI YEDEDEDADD DVFLVEVLET *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	22	RRQRLKENKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279758.1	1e-89	B3 domain-containing protein At3g19184-like isoform X2
Swissprot	Q1G3M3	9e-72	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A061E0U4	7e-88	A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	EOX98227	1e-88	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-66	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0019s0168.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]