PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0077.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 417aa    MW: 46157.7 Da    PI: 6.6761
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.4e-22117176357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0020s0077.1.p 117 SRWNPTPEQLRALEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 176
                          8*****************99**************************************97 PP
2Wus_type_Homeobox115.42.7e-37115178265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Kalax.0020s0077.1.p 115 SSSRWNPTPEQLRALEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 178
                          579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-6114181IPR001356Homeobox domain
PfamPF000461.7E-19117176IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-9117176IPR009057Homeodomain-like
SuperFamilySSF466893.89E-12117182IPR009057Homeodomain-like
CDDcd000861.13E-5118172No hitNo description
PROSITE profilePS5007111.029122177IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMGYTNPATA IPENNGGGGG NDQFGGSSMM GIMSPDSFNG RKLRPLIPRP SASAIPAHPT  60
CFNHTNCDTA SNFFTLNHHM AAAASHHHLV GVEEQAGKRE SFMSGHQHHQ SVVVSSSRWN  120
PTPEQLRALE ELYRRGTRTP SADQIQHITA QLRRYGKIEG KNVFYWFQNH KARERQKRRR  180
QQLENSSSSP NHQQSSHNHL HQDQQPKDQP SGDLSNHNDN KGTTGFEIEQ TKLWPAPANC  240
STLADQGSVH RTEKATAGLA AAAAAAECVT DDEWVQFQDH HNSLQIASTA ATTMLQDTND  300
TAGEHRRRRT SLNLLLTKNA TWDSSHHLSL PTPSAACSYF KPATVHQISM LNNEDIEDEN  360
NDQCSKEEGG LTLELFPLQS NGAMDLIKDD EDEIKATHST PFQFFEFLPL KNSNAN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-37WUSCHEL related homeobox 1