PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0093.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 610aa    MW: 68670.5 Da    PI: 6.1478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.33.5e-24892063128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pG+ F Ptd+e++v+yL+kk+e+ +++  ++i++ d+y+++Pw+L   +  +++++++fF+k+  +       nra+k g W  t  d+ 
  Kalax.0020s0093.1.p  89 PGYSFCPTDQEIIVQYLRKKMEDPDFKS-SAIPDKDVYSFDPWELYdGEQMTTRENLFFFTKTVVR-----GFNRAAKGGHWIMTMPDRF 172
                          8************************999.88**************743333344567888876554.....589**************** PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++  +g   g+++ + f kg+++   kt+W++ ey++
  Kalax.0020s0093.1.p 173 IKI-DGVWGGMRRQFEFIKGQEQW--KTNWTIYEYSV 206
                          **9.999***********888877..*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012172.2E-92335No hitNo description
PRINTSPR012172.2E-93960No hitNo description
PRINTSPR012172.2E-96379No hitNo description
SuperFamilySSF1019413.14E-3385224IPR003441NAC domain
PROSITE profilePS5100532.77687224IPR003441NAC domain
PfamPF023654.3E-1489206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MPSYAEVLMR GSARYQRRRN NAPPQPQPPP QPSPPPPPQP SPPPSPPPQP SPPPPQPSPP  60
PSPPSPPPPP SPSPPPAPPG GQQEMQSDPG YSFCPTDQEI IVQYLRKKME DPDFKSSAIP  120
DKDVYSFDPW ELYDGEQMTT RENLFFFTKT VVRGFNRAAK GGHWIMTMPD RFIKIDGVWG  180
GMRRQFEFIK GQEQWKTNWT IYEYSVPGND SQAEGWVVCR VFEQQESSIN NEMGSSQSAG  240
PPVSNNDCPH QQGRQLPVNR SSTHSDAPTV YSRNQQPVNM PATPPGPAHT ASSMASITPY  300
NYNMVNEQLR PCPNVWMPDW PPNSNFLQPD IRSTESLDPW FYDQDQHQSY VPNQQGQPQP  360
VNRSSTHSDA PTVDSHNQLP VNTPTTMQGP PDPTAPYSCD MVNQQLPGPN MRTFNPNFMQ  420
PGSASSTDPW FYNHNQHQWD APTTLQGPNQ PGYTSWTHSD EQQQIGWNPD QQQQFNMAAT  480
QGQNQPDYRS MTDSDGRRYY SHNQQNPTMP AQQGLLYPYG PAHPASNMIS TYYYNMGNQQ  540
QPRIITPPYH YNMGNQQQPG IRPPRYLRQN ISMYPDTRVV GVGGNFNSYF PRPDGGSSSS  600
HNQRPPYQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-198922819169NO APICAL MERISTEM PROTEIN
1ut4_B4e-198922819169NO APICAL MERISTEM PROTEIN
1ut7_A4e-198922819169NO APICAL MERISTEM PROTEIN
1ut7_B4e-198922819169NO APICAL MERISTEM PROTEIN
4dul_A4e-198922819169NAC domain-containing protein 19
4dul_B4e-198922819169NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.15e-24NAC domain containing protein 58