PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0094.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 520aa    MW: 58703.4 Da    PI: 8.3618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.41.5e-281032212128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pG+rF Ptdee++v+yL+kk+++ +++  + i++ d+y+++Pw+L   + ++++++++fF+k+          nra+k gyW+ t  d+
  Kalax.0020s0094.1.p 103 EPGYRFWPTDEEIIVHYLRKKIADPDFKS-RPIPDKDVYSFDPWELYdGEQRTSRENLFFFTKTVI-----GGLNRAAKGGYWSMTIPDR 186
                          59************************999.88**************74455555667788887654.....3579*9************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++  +g   g+++ + f kg++++  kt+W+mhey++
  Kalax.0020s0094.1.p 187 LIKI-DGVWAGMRRRFEFIKGQEQS--KTSWTMHEYSV 221
                          ***9.999***********988887..*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-38102239IPR003441NAC domain
PROSITE profilePS5100536.539102239IPR003441NAC domain
PfamPF023658.7E-19104221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSILPKISPI NQPFKIIIFT AKFTYAAYIS RFPPAIFLLE SCCPSSLPAH LLCLCFAACA  60
AMPSYAEVLR RGSARNKRRR NNAPPPPPPP PPPPGGQQEI QSEPGYRFWP TDEEIIVHYL  120
RKKIADPDFK SRPIPDKDVY SFDPWELYDG EQRTSRENLF FFTKTVIGGL NRAAKGGYWS  180
MTIPDRLIKI DGVWAGMRRR FEFIKGQEQS KTSWTMHEYS VPGNVSQGED WVVCRVFKQP  240
AGRPASNNDG PQLNVAAQQH GQPQPVNRSS THSDAPTVDS HNQLPVNTPT TLQGPPDPTG  300
PYSYNMVNQQ LPGPNMRTLN PNFMQPGSAS STDPWFYNHN QHQWDAPTTL QGPNQPGYTS  360
WTHSDEQQRG WNPDQQQQFN MAAMQGQNQP DYRSMTDSDG RKYYSHNQQN PTMPAQQGLY  420
PYGPAHHPAS NMFSTYHYNM GNQQQPGIRP PRYLRQNVSM YPDTRVVGVG GNFNSYFPRP  480
DDVPNSSHNQ RPHIRNDNQS SVQPQGRDCD IICPDSITD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2210423919165NO APICAL MERISTEM PROTEIN
1ut4_B2e-2210423919165NO APICAL MERISTEM PROTEIN
1ut7_A2e-2210423919165NO APICAL MERISTEM PROTEIN
1ut7_B2e-2210423919165NO APICAL MERISTEM PROTEIN
4dul_A2e-2210423919165NAC domain-containing protein 19
4dul_B2e-2210423919165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.15e-28NAC domain containing protein 58