PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0021s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 462aa    MW: 49886.7 Da    PI: 5.6853
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0021s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.46.7e-0536543856
                         TS-HHHHHHHHHHHHHHHH CS
             Homeobox 38 gLterqVkvWFqNrRakek 56
                          ++ +qV +WFqN+R+  k
  Kalax.0021s0052.1.p 36 VVQMKQVWNWFQNKRYALK 54
                         57889**********9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-4160IPR009057Homeodomain-like
PROSITE profilePS500719.086156IPR001356Homeobox domain
SuperFamilySSF466892.81E-7557IPR009057Homeodomain-like
PfamPF167192.2E-36115242IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEAVLQQHNN NLPPRELFVT LAEKFSNGPD RVGKIVVQMK QVWNWFQNKR YALKAKSNKA  60
PAKFDAAPLQ AVPPLPAALA PALHTIPPVR QEVDGSPSSN MARSLAPHSG KASINMEFEA  120
RSARDGAWYD VAAFLSVRNK DTDDPEVLVR FVGLTPEEDE WIKVSKHVRH RSLPCEASEC  180
VAVLPGDLIL CFQEAPDQAL YFDAHVLDAQ RMKHDSRGCR CRFLVRYDHD QFEEIVPLRK  240
ICSRPETDYR LQIYQTLRDL PTQEKKIDES SACSVPLANN SLAESVQMPE KVDDNTVAAS  300
SAAANQPDRA TVPSSPPFAH EKSKDSPEEG NVGNAAGGNA SKGTRKAEEK LEKDDAVTKR  360
PRKSDQVENP VGQDASTPPT VPESDKQDEI QGLAVSAAAE KGSSHAVAKE KEAGPTVSKD  420
GAAVEAGNPN PTGVALTCQN QTNGGSSGGS SDVPVGAQQC F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-421132461134SHH1 SAWADEE
4iur_B1e-421132461134SHH1 SAWADEE
4iut_A1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-421132461134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683099.11e-118protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-108SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P2JYD81e-116A0A2P2JYD8_RHIMU; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
STRINGcassava4.1_011330m1e-116(Manihot esculenta)
STRINGXP_010060636.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-108sequence-specific DNA binding transcription factors;sequence-specific DNA binding