PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0022s0052.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 1466aa MW: 161500 Da PI: 5.372

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0022s0052.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	698	739	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +++ d + lG++ ++ Ia+ + ++t +c+++++k Kalax.0022s0052.2.p 698 AWTSEERDIFRDKLASLGKD-FRNIASFLD-HKTTADCVEFYYK 739 7***************99.*****.*********98 PP
2	Myb_DNA-binding	24.1	8.6e-08	916	958	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g WT E +v vk +G++ + +I+ ++g +++ qcks++ k Kalax.0022s0052.2.p 916 GYWTDREKSVFVSSVKSYGKD-FYKISGCIG-TKSKDQCKSFYSK 958 67***************99.*****.********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.4E-12	682	743	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.813	694	745	IPR017884	SANT domain
SMART	SM00717	4.2E-7	695	743	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-4	698	739	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.752	913	964	IPR017884	SANT domain
SuperFamily	SSF46689	7.33E-10	913	964	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-5	914	962	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-5	916	958	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-4	918	956	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1466 aa Download sequence Send to blast
MEDRNPSLFE GNEALIKTVR LDHELLQPSD EVLEDAGAFQ LRKRLCISSA VDENCSSNSG 60 VSGSQKDMKL DGSADVLAEG ACNASLSHSL RMPHQESTSI SEGRVLEVIT DQKLADGIQH 120 HHDPNGYSLG LDCKPIRWPL SGSFSSHESE LSQSSSSKSV PVEFSCSRIR LPLENRKSYQ 180 SATEDTITCV TPTTPSEDMS PWKRPRLRWG EGLAKFEKTK SSGPNDMPTK SDPVSVISAQ 240 ISYTASLVTL PSTACNSSPE SEEKSTSKAV MADSRSDVTR TMFSECSNHL GSTSFNLEAL 300 DLSVTNHTAP SLIEVINYDN QCSSDRSFRS CSAMSNLLLL KSTILQAIDM TESQVDLLEN 360 ELKSFDDECG CNDLRCLPSD VPTSKFIKEF GKVQEGASGM SCGHALPSNS STKLFRVKVP 420 LDSGNSGLKA DMDSPGTVTS KLVELSTFTE PHVENGTRND VDCCFDLDAS RFPQEIQKTS 480 KFTSQEERKS NFCIDAFVRN NNSELVSSDD HWDMSLDETE QLIDSIRASN KESADKASEQ 540 FNGVFPVAER IQGDSVEEGC SGDLFIREII IRKKKALRFK EHAVILKWKA LHSTWKDDKR 600 LLSVRSHRPK AQKQWEMFSQ TAQNNNPSVS SNSLHDTNSS LNMGKLPFIS HMKHCRSVLK 660 MPALILDDDE RRMCRFLSRN GLVEDPCAVE KERSMINAWT SEERDIFRDK LASLGKDFRN 720 IASFLDHKTT ADCVEFYYKN HKSGSFAKTV EKQERRMLDK SLYCNTYLVT SGKKWDRNMN 780 TASLDILGAA SEIVARNSES KEKKKKNSCN ILLHGLGCIQ RPQKDSLILD RPSDFRLAEY 840 EIGTTDSEIL PGACGSASSE AVSSCLTSSV NQEEGHRNGI SKTLSIISEP LSIPEDMQTD 900 DDETCSEESS CELDVGYWTD REKSVFVSSV KSYGKDFYKI SGCIGTKSKD QCKSFYSKAR 960 KCLGLDVELP DNDHEQQSVI NDSNGDGSSA AFTSTLEAVP DTGSYKLNQR IDEDLSLNAS 1020 VTSNVDSLSP DASMKLRTCH DQLKDKKGSL VLPSAEAKVE GDSVDRSASD PDKLCACNKS 1080 AVSTDTDAQA SANKSVDISP SLPFVVHQVS SFALLEKEKC SMEPPLLHNQ CGKTDTSRGS 1140 FQNIVSYFTG DAGTAKAPRK YSIDDRTFEF DASAPRHLYM SKGSVGTETS QECVLHHTSF 1200 GPSNSTPMYT AALPTPMVPF EKISVGETIS VGETQEHFQR SHYVGNHLLN PDCAPSDKFF 1260 VSHNFEKETE KEKKGLAWNL NFEDSTVSRD SNSDSENRLL QYTCIPQGGY IQKCNSLNSN 1320 CSINGFPYLK NLVGPKKQGK QGNIKLFGQV LIPPTAPESH SDSDLMEESK FTQLNGAQMD 1380 MGPSNQHDMF SGNENLPVRC FWDGRRMQNA PLLVSRPILL SHDASSSSIL DCKPLQTSAV 1440 PNVDAPPNAG SIFGNSLNRC TMPRL*

Sequence ? help Back to Top

Protein Sequence Length: 1466 aa Download sequence Send to blast

MEDRNPSLFE GNEALIKTVR LDHELLQPSD EVLEDAGAFQ LRKRLCISSA VDENCSSNSG  60
VSGSQKDMKL DGSADVLAEG ACNASLSHSL RMPHQESTSI SEGRVLEVIT DQKLADGIQH  120
HHDPNGYSLG LDCKPIRWPL SGSFSSHESE LSQSSSSKSV PVEFSCSRIR LPLENRKSYQ  180
SATEDTITCV TPTTPSEDMS PWKRPRLRWG EGLAKFEKTK SSGPNDMPTK SDPVSVISAQ  240
ISYTASLVTL PSTACNSSPE SEEKSTSKAV MADSRSDVTR TMFSECSNHL GSTSFNLEAL  300
DLSVTNHTAP SLIEVINYDN QCSSDRSFRS CSAMSNLLLL KSTILQAIDM TESQVDLLEN  360
ELKSFDDECG CNDLRCLPSD VPTSKFIKEF GKVQEGASGM SCGHALPSNS STKLFRVKVP  420
LDSGNSGLKA DMDSPGTVTS KLVELSTFTE PHVENGTRND VDCCFDLDAS RFPQEIQKTS  480
KFTSQEERKS NFCIDAFVRN NNSELVSSDD HWDMSLDETE QLIDSIRASN KESADKASEQ  540
FNGVFPVAER IQGDSVEEGC SGDLFIREII IRKKKALRFK EHAVILKWKA LHSTWKDDKR  600
LLSVRSHRPK AQKQWEMFSQ TAQNNNPSVS SNSLHDTNSS LNMGKLPFIS HMKHCRSVLK  660
MPALILDDDE RRMCRFLSRN GLVEDPCAVE KERSMINAWT SEERDIFRDK LASLGKDFRN  720
IASFLDHKTT ADCVEFYYKN HKSGSFAKTV EKQERRMLDK SLYCNTYLVT SGKKWDRNMN  780
TASLDILGAA SEIVARNSES KEKKKKNSCN ILLHGLGCIQ RPQKDSLILD RPSDFRLAEY  840
EIGTTDSEIL PGACGSASSE AVSSCLTSSV NQEEGHRNGI SKTLSIISEP LSIPEDMQTD  900
DDETCSEESS CELDVGYWTD REKSVFVSSV KSYGKDFYKI SGCIGTKSKD QCKSFYSKAR  960
KCLGLDVELP DNDHEQQSVI NDSNGDGSSA AFTSTLEAVP DTGSYKLNQR IDEDLSLNAS  1020
VTSNVDSLSP DASMKLRTCH DQLKDKKGSL VLPSAEAKVE GDSVDRSASD PDKLCACNKS  1080
AVSTDTDAQA SANKSVDISP SLPFVVHQVS SFALLEKEKC SMEPPLLHNQ CGKTDTSRGS  1140
FQNIVSYFTG DAGTAKAPRK YSIDDRTFEF DASAPRHLYM SKGSVGTETS QECVLHHTSF  1200
GPSNSTPMYT AALPTPMVPF EKISVGETIS VGETQEHFQR SHYVGNHLLN PDCAPSDKFF  1260
VSHNFEKETE KEKKGLAWNL NFEDSTVSRD SNSDSENRLL QYTCIPQGGY IQKCNSLNSN  1320
CSINGFPYLK NLVGPKKQGK QGNIKLFGQV LIPPTAPESH SDSDLMEESK FTQLNGAQMD  1380
MGPSNQHDMF SGNENLPVRC FWDGRRMQNA PLLVSRPILL SHDASSSSIL DCKPLQTSAV  1440
PNVDAPPNAG SIFGNSLNRC TMPRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	656	746	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	656	746	4	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0022s0052.2.p