PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0116.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 95aa    MW: 10668 Da    PI: 8.5427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-0728611954
                         HHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                  HLH 19 afeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                          +++L+ l+P+a   +s+   s + +L+++++YIk L
  Kalax.0022s0116.1.p 28 LLSKLQHLIPEA---RSRNrASASKVLQETCDYIKRL 61
                         689********7...55555***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.28961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-82781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-82877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-42861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRSRSSRS RQHSSSSATI SEDQVLHLLS KLQHLIPEAR SRNRASASKV LQETCDYIKR  60
LHQEVDDLSE RLAELLATMD VDNAQAAMIR NLFM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258538.12e-32PREDICTED: transcription factor PRE5-like
SwissprotB8APB55e-27ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR25e-27ILI6_ORYSJ; Transcription factor ILI6
TrEMBLA0A314LFI55e-31A0A314LFI5_NICAT; Transcription factor pre5
STRINGXP_009758713.15e-31(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-28bHLH family protein