PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0119.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36828.8 Da    PI: 6.6567
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-1895147456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Kalax.0022s0119.1.p  95 KRRLNMEQVKTLEKSFEMGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 147
                          55899***********************************************9 PP
2HD-ZIP_I/II132.41.7e-4294184292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl+ eqvk+LE+sFe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++da+k++ne+L++++++L++++
  Kalax.0022s0119.1.p  94 KKRRLNMEQVKTLEKSFEMGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDAVKAHNEALQAQNQKLQSQI 183
                          9**************************************************************************************998 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Kalax.0022s0119.1.p 184 S 184
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.7389149IPR001356Homeobox domain
SuperFamilySSF466893.08E-1991151IPR009057Homeodomain-like
SMARTSM003891.4E-1892153IPR001356Homeobox domain
PfamPF000468.8E-1694147IPR001356Homeobox domain
CDDcd000862.05E-1694150No hitNo description
Gene3DG3DSA:1.10.10.605.5E-1996157IPR009057Homeodomain-like
PRINTSPR000311.9E-5120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5129145IPR000047Helix-turn-helix motif
PfamPF021833.7E-14149186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSCNGMAFFP ANFMLQTSQD QEDEDDNHQR HHHHQPPVFP PQDFNGVAAF LGGKRSMPLM  60
QQDHNHACED TKIHNGDQDH ELSDDGSLLA GDPKKRRLNM EQVKTLEKSF EMGNKLEPER  120
KLQLARALGL QPRQIAIWFQ NRRARWKTKQ LEKDYDALKR QFDAVKAHNE ALQAQNQKLQ  180
SQISVLMSGG GAAAAVATES FNLNKETIDQ GSCSNRSENS SDHQTNMVKL DMMSRAVTGP  240
ASESSPSQQI PTSMPLFPTS SSTTTTTTNS MRPASSSNLS ATQLFFHHQG HHQQHGVKEE  300
NFVSNMFCGI EDQSGFWPWL EQHQNFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614380.11e-106homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614381.11e-106homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614382.11e-106homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614383.11e-106homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC033e-91ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A251KUY61e-104A0A251KUY6_MANES; Uncharacterized protein
STRINGXP_002520111.11e-103(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-85HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]