PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0138.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 342aa    MW: 38604.2 Da    PI: 7.1396
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k
  Kalax.0022s0138.1.p  38 FLTKTYHLVDDPSTDHVVSWGDDHSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEK 118
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Kalax.0022s0138.1.p 119 QLLCEIQRRKTS 130
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3730122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.88E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALIMENHNN GGSCCNYDDT MNNILLSLDS HKSVPAPFLT KTYHLVDDPS TDHVVSWGDD  60
HSTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN EFFRKGEKQL  120
LCEIQRRKTS QPHVSINHHH HGHQGQYSQQ FGFGPHSYFP YPSRLSISPP DLDENNNINY  180
NGISCHIWGC DTDLSHPKIS SPTTSGMIGG GGVGLCEDNE RLRRSNSMLM SELAHMRKLY  240
NDIIYFVQNH VKPVAPSNAY CPLSSPLVTA AARGVRNFND LSNNTSQSSV TVAENDDNDE  300
DENRRMRLFG VPLIRTTLSP SASKKRLHSE LGLNLMPPSP C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-233413017123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1017001e-54AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBankAY3444841e-54AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
GenBankCT8310261e-54CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence.
GenBankCU4063541e-54CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBankCU4068841e-54CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879895.11e-122heat stress transcription factor B-4-like
SwissprotQ9C6351e-104HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2R6RN681e-118A0A2R6RN68_ACTCH; Heat stress transcription factor B-4 like
STRINGXP_002510200.11e-116(Ricinus communis)
STRINGXP_009800135.11e-116(Nicotiana sylvestris)
STRINGXP_009611319.11e-116(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-97heat shock transcription factor B4